GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000040-TA|BGIBMGA000040-PA|undefined
         (142 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81493-10|CAB04044.2|  508|Caenorhabditis elegans Hypothetical p...    30   0.72 
Z81530-1|CAB04312.1|  290|Caenorhabditis elegans Hypothetical pr...    28   2.2  
AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic ...    28   2.9  
AC006791-1|ABM01865.1| 1043|Caenorhabditis elegans Metabotropic ...    28   2.9  
U23179-6|AAK68205.1|  341|Caenorhabditis elegans Serpentine rece...    27   3.8  
Z81015-3|CAB02660.1|  411|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AF067618-1|AAC19199.1| 1101|Caenorhabditis elegans Hypothetical ...    27   5.1  
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    26   8.8  

>Z81493-10|CAB04044.2|  508|Caenorhabditis elegans Hypothetical
           protein F01D5.9 protein.
          Length = 508

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 105 KYLMRLVQDFLNVKGLKVEIPEGARTVEEETADDGELL 142
           KYL + V++ L    ++  +P+ AR+VEEE   DG++L
Sbjct: 365 KYLEKCVKEALR---MRPSVPQMARSVEEEVEIDGKIL 399


>Z81530-1|CAB04312.1|  290|Caenorhabditis elegans Hypothetical
          protein F36D1.1 protein.
          Length = 290

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 11/40 (27%), Positives = 24/40 (60%)

Query: 53 ETFFGDNNNETIKTNLFSLVPLDVETINSLGVKKTVRDVK 92
          + +FG++N  T+KT+    V  ++ ++  + +K T  DV+
Sbjct: 25 KNYFGESNYRTLKTSCLREVTSELNSMFQMPIKFTCEDVR 64


>AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic
            glutamate receptorfamily protein 3, isoform a protein.
          Length = 1042

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 51   IKETFFGDNNNETIKTNLFSLVPLDVETINSLGVKKTVRDVKPRGFLSE 99
            +++ FF +NNN      +    P  V T+ ++    +V  + PR +  E
Sbjct: 955  LQDKFFNNNNNNENSEEIRRRRPSSVHTVGAVTNGSSVAHIPPRSYTDE 1003


>AC006791-1|ABM01865.1| 1043|Caenorhabditis elegans Metabotropic
            glutamate receptorfamily protein 3, isoform d protein.
          Length = 1043

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 51   IKETFFGDNNNETIKTNLFSLVPLDVETINSLGVKKTVRDVKPRGFLSE 99
            +++ FF +NNN      +    P  V T+ ++    +V  + PR +  E
Sbjct: 956  LQDKFFNNNNNNENSEEIRRRRPSSVHTVGAVTNGSSVAHIPPRSYTDE 1004


>U23179-6|AAK68205.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 1 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 48  LKVIKETFFGDNNNETIKTNLFSLVPLDVETINSLGVK 85
           ++ + ETFFG   N T+   ++  VP    TI  +G+K
Sbjct: 260 IRTVGETFFGSYINYTVARGVYISVPTYNLTIVFVGIK 297


>Z81015-3|CAB02660.1|  411|Caenorhabditis elegans Hypothetical
           protein C11E4.3 protein.
          Length = 411

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 111 VQDFLNVKGLKVEIPEGARTVEEETADD 138
           V D  N+ GL+ +I E    + ++TADD
Sbjct: 106 VPDSFNITGLRGDIKESLPDISDKTADD 133


>AF067618-1|AAC19199.1| 1101|Caenorhabditis elegans Hypothetical
           protein F56H1.3 protein.
          Length = 1101

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 96  FLSEWAEFAKYLMRLVQDFLNVKGLKVEIPEGARTVE 132
           FL+E  +F+K L+ L  D    K +   IP+GA  V+
Sbjct: 297 FLNEQRQFSKVLISLKNDMKLSKPIWENIPKGAELVK 333


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 18/62 (29%), Positives = 25/62 (40%)

Query: 6   IVLFMATLQLSRSNVTEDGYLRYVKDSCFVKGEAISCVKYKGLKVIKETFFGDNNNETIK 65
           +VLF + +         D YLR  K+    K   IS       K++      DN + TIK
Sbjct: 39  VVLFFSRVSALFFTFVIDKYLRLSKNGIHFKIGGISISGLHAGKIMFRNVIYDNGDMTIK 98

Query: 66  TN 67
            N
Sbjct: 99  VN 100


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.137    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,334,457
Number of Sequences: 27539
Number of extensions: 132807
Number of successful extensions: 290
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 8
length of query: 142
length of database: 12,573,161
effective HSP length: 75
effective length of query: 67
effective length of database: 10,507,736
effective search space: 704018312
effective search space used: 704018312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)