Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000040-TA|BGIBMGA000040-PA|undefined
(142 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide famil... 29 1.2
At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide famil... 29 1.2
At2g45840.1 68415.m05701 expressed protein 29 1.6
At3g22000.1 68416.m02776 receptor-like protein kinase-related co... 27 3.7
At2g36885.2 68415.m04523 expressed protein 27 4.9
At2g36885.1 68415.m04522 expressed protein 27 4.9
At5g37580.1 68418.m04527 tropomyosin-related low similarity to t... 26 8.5
At1g07520.1 68414.m00805 scarecrow transcription factor family p... 26 8.5
At1g02100.3 68414.m00136 leucine carboxyl methyltransferase fami... 26 8.5
At1g02100.2 68414.m00134 leucine carboxyl methyltransferase fami... 26 8.5
At1g02100.1 68414.m00135 leucine carboxyl methyltransferase fami... 26 8.5
>At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide family
protein contains Pfam profile: PF05558 DREPP plasma
membrane polypeptide
Length = 225
Score = 29.1 bits (62), Expect = 1.2
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 34 FVKGEAISCVKYKGLKVIKETFFGDNNNETIKTNLFSLVPLDVETIN--SLGVKKTVRDV 91
F K A + K E+ + N+ I+ L P VET S VK VRD
Sbjct: 16 FEKNSAKKAAAAEATKTFDES--KETINKEIEEKKTELQPKVVETYEATSAEVKALVRDP 73
Query: 92 KPRGFLSEWAEFAKYLMRLVQDFLNVKGLKVEIPEGARTVEEETADDG 139
K G A KYL LV K+E P G++ V E ++ G
Sbjct: 74 KVAGLKKNSAAVQKYLEELV---------KIEFP-GSKAVSEASSSFG 111
>At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide family
protein contains Pfam profile: PF05558 DREPP plasma
membrane polypeptide
Length = 225
Score = 29.1 bits (62), Expect = 1.2
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 34 FVKGEAISCVKYKGLKVIKETFFGDNNNETIKTNLFSLVPLDVETIN--SLGVKKTVRDV 91
F K A + K E+ + N+ I+ L P VET S VK VRD
Sbjct: 16 FEKNSAKKAAAAEATKTFDES--KETINKEIEEKKTELQPKVVETYEATSAEVKALVRDP 73
Query: 92 KPRGFLSEWAEFAKYLMRLVQDFLNVKGLKVEIPEGARTVEEETADDG 139
K G A KYL LV K+E P G++ V E ++ G
Sbjct: 74 KVAGLKKNSAAVQKYLEELV---------KIEFP-GSKAVSEASSSFG 111
>At2g45840.1 68415.m05701 expressed protein
Length = 523
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 106 YLMRLVQDFLNVKGLKVEIPEGARTVEEET 135
Y++ L+Q + + + VE+P+GA+ V ET
Sbjct: 424 YMLHLLQSYGKLMKMNVEVPQGAKEVCPET 453
>At3g22000.1 68416.m02776 receptor-like protein kinase-related
contains Pfam profile: PF01657 Domain of unknown
function that is usually associated with protein kinase
domain Pfam:PF00069; similar to receptor-like protein
kinase 5 (GI:13506747){Arabidopsis thaliana}
Length = 273
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/75 (24%), Positives = 33/75 (44%)
Query: 31 DSCFVKGEAISCVKYKGLKVIKETFFGDNNNETIKTNLFSLVPLDVETINSLGVKKTVRD 90
D CFV+ +IS + + K+ E F +N + N+ S + + L +K +D
Sbjct: 130 DQCFVEITSISVIDFNISKINYENNFPLHNPNRVSGNIKSFNNETMALLKELALKANNKD 189
Query: 91 VKPRGFLSEWAEFAK 105
G ++ +A K
Sbjct: 190 NMDNGKMALYASGEK 204
>At2g36885.2 68415.m04523 expressed protein
Length = 227
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 57 GDNNNETIKTNLFSLVPLDVETINSLGVKKTVRDV 91
GD+ NE +T + S+ PL + + SL +TVR V
Sbjct: 72 GDDENEIRETLMLSVSPLPLLLVASLPGAETVRSV 106
>At2g36885.1 68415.m04522 expressed protein
Length = 256
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 57 GDNNNETIKTNLFSLVPLDVETINSLGVKKTVRDV 91
GD+ NE +T + S+ PL + + SL +TVR V
Sbjct: 72 GDDENEIRETLMLSVSPLPLLLVASLPGAETVRSV 106
>At5g37580.1 68418.m04527 tropomyosin-related low similarity to
tropomyosin gene 1, isoform 9D, D.melanogaster,
EMBL:DMTRO13 (GI:158696)
Length = 239
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 22 EDGYLRYVKDSCFVKGEAISCVKY-KGLKVIKET 54
E GY ++DS VK E +SC+K+ L KET
Sbjct: 175 EFGYGTQLQDSSEVKSEYLSCLKHLSALLAKKET 208
>At1g07520.1 68414.m00805 scarecrow transcription factor family
protein similar to GB:AAD24412 from [Arabidopsis
thaliana] (Plant J. 18 (1), 111-119 (1999)); contains
Pfam profile: PF03514 GRAS family transcription factor
Length = 695
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 60 NNETIKTNLFSLVPLDVETINSLGVKKTVRDVKP 93
N ETIK F + P +V +N++ K +RDV P
Sbjct: 502 NWETIKMEEFKIRPNEVLAVNAVLRFKNLRDVIP 535
>At1g02100.3 68414.m00136 leucine carboxyl methyltransferase family
protein contains Pfam PF04072: Leucine carboxyl
methyltransferase domain; similar to Leucine carboxyl
methyltransferase (Protein-leucine O-
methyltransferase) (CGI-68) (SP:Q9UIC8) {Homo sapiens}
Length = 332
Score = 26.2 bits (55), Expect = 8.5
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 82 LGVKKTVR--DVKPRGFLSEWAEFAKYLMRLVQDFLNVKGLKVEIPEGARTVEEETADDG 139
L VK+ VR + RG+ S WA F K + + + + K + + G T + D+G
Sbjct: 38 LFVKRPVRRSPIINRGYFSRWAAFRKLMSQFLLSGTSSKKQILSLGAGFDTTYFQLLDEG 97
>At1g02100.2 68414.m00134 leucine carboxyl methyltransferase family
protein contains Pfam PF04072: Leucine carboxyl
methyltransferase domain; similar to Leucine carboxyl
methyltransferase (Protein-leucine O-
methyltransferase) (CGI-68) (SP:Q9UIC8) {Homo sapiens}
Length = 306
Score = 26.2 bits (55), Expect = 8.5
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 82 LGVKKTVR--DVKPRGFLSEWAEFAKYLMRLVQDFLNVKGLKVEIPEGARTVEEETADDG 139
L VK+ VR + RG+ S WA F K + + + + K + + G T + D+G
Sbjct: 38 LFVKRPVRRSPIINRGYFSRWAAFRKLMSQFLLSGTSSKKQILSLGAGFDTTYFQLLDEG 97
>At1g02100.1 68414.m00135 leucine carboxyl methyltransferase family
protein contains Pfam PF04072: Leucine carboxyl
methyltransferase domain; similar to Leucine carboxyl
methyltransferase (Protein-leucine O-
methyltransferase) (CGI-68) (SP:Q9UIC8) {Homo sapiens}
Length = 332
Score = 26.2 bits (55), Expect = 8.5
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 82 LGVKKTVR--DVKPRGFLSEWAEFAKYLMRLVQDFLNVKGLKVEIPEGARTVEEETADDG 139
L VK+ VR + RG+ S WA F K + + + + K + + G T + D+G
Sbjct: 38 LFVKRPVRRSPIINRGYFSRWAAFRKLMSQFLLSGTSSKKQILSLGAGFDTTYFQLLDEG 97
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.137 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,291,665
Number of Sequences: 28952
Number of extensions: 131367
Number of successful extensions: 327
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 11
length of query: 142
length of database: 12,070,560
effective HSP length: 74
effective length of query: 68
effective length of database: 9,928,112
effective search space: 675111616
effective search space used: 675111616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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