GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000039-TA|BGIBMGA000039-PA|IPR000875|Cecropin,
IPR003254|Insect immunity protein and cecropin
         (59 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032655-2|CAB60457.1|  561|Caenorhabditis elegans Hypothetical ...    25   4.8  
Z48809-5|CAE17927.1|  205|Caenorhabditis elegans Hypothetical pr...    25   8.4  
AC025723-2|AAK29943.1|  581|Caenorhabditis elegans Hypothetical ...    25   8.4  

>AL032655-2|CAB60457.1|  561|Caenorhabditis elegans Hypothetical
           protein Y6B3B.4 protein.
          Length = 561

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 10  LFVVVFATASAKPWNFFKE 28
           LF  +F   SAK W+FF E
Sbjct: 340 LFFYIFEDFSAKKWSFFPE 358


>Z48809-5|CAE17927.1|  205|Caenorhabditis elegans Hypothetical
          protein T01E8.8 protein.
          Length = 205

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 4  TRIIFFLFVVVFATASAKPWNFFKEIERAVARTRDAVIS 42
          ++ +  L +++F+T+SAK  N+ +  E A+      VIS
Sbjct: 13 SKSLLILAIILFSTSSAKEKNYVEIPEPALLNGTSYVIS 51


>AC025723-2|AAK29943.1|  581|Caenorhabditis elegans Hypothetical
          protein Y54F10AM.8 protein.
          Length = 581

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 5  RIIFFLFVVVFATASAKPW 23
          +++FFLF ++FA    KP+
Sbjct: 2  KLLFFLFGLIFAVEQEKPY 20


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.338    0.141    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 764,191
Number of Sequences: 27539
Number of extensions: 14953
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 3
length of query: 59
length of database: 12,573,161
effective HSP length: 40
effective length of query: 19
effective length of database: 11,471,601
effective search space: 217960419
effective search space used: 217960419
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.8 bits)
S2: 51 (24.6 bits)