Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000035-TA|BGIBMGA000035-PA|undefined
(164 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 29 0.26
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 27 1.8
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 26 3.2
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 26 3.2
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 4.3
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 5.6
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 25 7.4
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c... 24 9.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 24 9.8
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 29.5 bits (63), Expect = 0.26
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 68 YVHQMTKPTLQPKPMGTFRTEPKLKDEQTTQANKRRQKKWNSKV---VRNRTPFQNL-QR 123
Y+ Q T+ + + KP+ + K ++ T+ KRRQ++ V R R+P + ++
Sbjct: 128 YMAQSTRRSTRDKPLTSAAAG---KRDKLTELKKRRQERSARSVSERTRKRSPVSDYEEQ 184
Query: 124 NRFRRSLESDNLFVIRDLDEIEFLGKDNDSVTV 156
N +S E + +++E + KDN S +
Sbjct: 185 NESEKSEEEEGYSPSYAEEKVEQVSKDNASANL 217
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 26.6 bits (56), Expect = 1.8
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 71 QMTKPTLQPKP--MGTFRTEPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRR 128
++ KPTL + + PKL+DE+ A KR ++K + +N + + +
Sbjct: 78 EVEKPTLSATVGRVSFLKKMPKLEDEEEILAKKREEQKLRKRSRQNDDGSDDDEVENLKN 137
Query: 129 SLESDNL 135
LE L
Sbjct: 138 DLELQKL 144
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 3.2
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 70 HQMTKPTLQPKPMGTFRTEPKLKDEQTTQANKRRQKKWNSKVVR-NRTPFQNLQRNRFRR 128
HQ++ K + +TE L E+ +A K+++K + K+ L++ +
Sbjct: 348 HQISVMQNDEKRINNAKTELSLSLEKKLEAKKQKEKVYKDKLDELANLETMVLEKKKAVA 407
Query: 129 SLESDNLFVIRDLDEIEFLGKD 150
+ E+ N + DL+++E L KD
Sbjct: 408 TREAANKIRLVDLNDLE-LQKD 428
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 3.2
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 12 FPIPQHNSTYI---DKSDNILRVPAIAYDDQKTRRKYK 46
F + +++S+Y K+D++ RV I++ D K ++YK
Sbjct: 243 FAVTKNSSSYFLGDAKNDSLQRVYGISFPDNKQMQEYK 280
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 25.4 bits (53), Expect = 4.3
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 108 NSKVVRNRTPFQNLQRNRFRRSLESDNLFVIRDLDEIEFLGKDNDSVTV 156
NS+ V + + ++ + R LES+NL + + IE L KD +++ V
Sbjct: 732 NSEAVSDEQERELIESEKHRMKLESENLHLQAN---IELLKKDLEAINV 777
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.0 bits (52), Expect = 5.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 122 QRNRFRRSLESDNLFVIRDLDEIEFLGKDNDSVT 155
+R+R E L + DL EI +G+DN+ T
Sbjct: 2634 ERDRINSGSERVKLEEVEDLAEINAVGRDNEVST 2667
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 24.6 bits (51), Expect = 7.4
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 1 MFQIQWPLAHDFPIPQHNSTYIDKSD--NILRVPAIAYDDQK 40
+ I+ +++ F IP H ST++ S ++ P DDQK
Sbjct: 448 LLDIKALISYHFAIPVHTSTFVFASSERDVSFSPKTVRDDQK 489
>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 408
Score = 24.2 bits (50), Expect = 9.8
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 105 KKWNSKVVRNRTPFQNLQRNRFRRSLESDNLFV-IRDLD 142
K+WN + + PF L R + + NLF +RDLD
Sbjct: 333 KRWNEESFPSHCPFVFLHMGRDGHEI-TKNLFAQLRDLD 370
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 24.2 bits (50), Expect = 9.8
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 108 NSKVVRNRTPFQNLQRNRFRRSLESDNLF-VIR-DL----DEIEFLGKDNDSVT 155
N +V R+ N + + +SDN+ VIR DL DE++ L KD DS++
Sbjct: 1167 NEALVEERSDLANRLSDMKKSLSDSDNVISVIRSDLVRVNDELDTLKKDKDSLS 1220
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.132 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 754,262
Number of Sequences: 5004
Number of extensions: 29157
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 9
length of query: 164
length of database: 2,362,478
effective HSP length: 68
effective length of query: 96
effective length of database: 2,022,206
effective search space: 194131776
effective search space used: 194131776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)
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