Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000035-TA|BGIBMGA000035-PA|undefined
(164 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40409-8|AAA81389.1| 156|Caenorhabditis elegans Hypothetical pr... 30 0.94
Z49937-3|CAA90186.2| 455|Caenorhabditis elegans Hypothetical pr... 29 1.6
U31537-1|AAA82991.1| 455|Caenorhabditis elegans variable abnorm... 29 1.6
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 29 2.2
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 28 2.9
AL034393-9|CAA22314.1| 248|Caenorhabditis elegans Hypothetical ... 28 2.9
Z79694-2|CAB01960.1| 173|Caenorhabditis elegans Hypothetical pr... 28 3.8
AF022968-5|AAB69884.1| 388|Caenorhabditis elegans Dehydrogenase... 27 5.0
Z70309-9|CAH10784.1| 323|Caenorhabditis elegans Hypothetical pr... 27 6.6
AF016671-6|AAK73904.1| 979|Caenorhabditis elegans Adaptin or ad... 27 6.6
AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or ad... 27 6.6
U50307-2|AAA92303.1| 558|Caenorhabditis elegans Serine palmitoy... 27 8.8
U50307-1|AAK71365.1| 586|Caenorhabditis elegans Serine palmitoy... 27 8.8
U39849-8|AAA81050.1| 479|Caenorhabditis elegans Hypothetical pr... 27 8.8
>U40409-8|AAA81389.1| 156|Caenorhabditis elegans Hypothetical
protein F32A6.1 protein.
Length = 156
Score = 29.9 bits (64), Expect = 0.94
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 92 KDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLESDNLFVIRDLDEIEFLGKDN 151
KD+ T Q KR + K+ + ++ ++ ++F LE DN ++ ++ E+E +D
Sbjct: 12 KDKITDQRTKRDEVKYVVQQKMSQLATIKMEADQFMAELERDNKRLVENVKELETTVRDC 71
Query: 152 D 152
D
Sbjct: 72 D 72
>Z49937-3|CAA90186.2| 455|Caenorhabditis elegans Hypothetical
protein F14F3.1a protein.
Length = 455
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 75 PTLQPKPMGTFRTEPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLE 131
P ++PK G F + K + + + + K+ RNRT F +Q + E
Sbjct: 181 PLIEPKTEGEFEKDEDQKPPTEPEDDAAARMRLKRKLQRNRTSFTQVQIESLEKEFE 237
>U31537-1|AAA82991.1| 455|Caenorhabditis elegans variable
abnormal-3 protein.
Length = 455
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 75 PTLQPKPMGTFRTEPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLE 131
P ++PK G F + K + + + + K+ RNRT F +Q + E
Sbjct: 181 PLIEPKTEGEFEKDEDQKPPTEPEDDAAARMRLKRKLQRNRTSFTQVQIESLEKEFE 237
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 88 EPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLESD 133
E K DE++ + +++++KK + + R+R+ ++ R+R RR D
Sbjct: 861 ESKKSDEKSERKSEKKEKKRDKERKRSRSRSRDRDRDRSRRDRSRD 906
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 8 LAHDFPIPQHNSTYIDKSDNILRVPAIAYDDQ--KTRRKYKK 47
LA+ +P+ +S ++ D+I+R A+ Y DQ K R Y K
Sbjct: 66 LANAYPLNTWDSNFMKIDDDIIRKEALHYRDQDMKNREMYLK 107
>AL034393-9|CAA22314.1| 248|Caenorhabditis elegans Hypothetical
protein Y18D10A.11 protein.
Length = 248
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 87 TEPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLESDNLFVI 138
T+ + + E QA K +QK+W ++ +R + L + + E++ L ++
Sbjct: 57 TQLESRLEVVQQAAKAQQKRWEGELASSRAQNEQLSEEKSQLQKENEELLLV 108
>Z79694-2|CAB01960.1| 173|Caenorhabditis elegans Hypothetical
protein C15A11.2 protein.
Length = 173
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 38 DQKTRRKYKKTPKSTXXXXXXXXXXXXXXLYVHQMTKPTLQPKPMGTFRTEPKLKDEQTT 97
DQ + + K+ PK V + KP L+ +P + +PK K+E+ T
Sbjct: 79 DQLVKEQPKEQPKEQPKEQPKEQPKDQAKDVVKDIAKPPLKEQPKEQPKEQPKKKEEEKT 138
Query: 98 QAN 100
N
Sbjct: 139 SKN 141
>AF022968-5|AAB69884.1| 388|Caenorhabditis elegans Dehydrogenases,
short chain protein16 protein.
Length = 388
Score = 27.5 bits (58), Expect = 5.0
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 83 GTFRTEPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLES 132
G F+TE D Q R QK WNS V + + RN F R+ E+
Sbjct: 219 GCFKTELLNNDAQ----RMRIQKIWNSLSVETKEEYGEDYRNDFERAWEA 264
>Z70309-9|CAH10784.1| 323|Caenorhabditis elegans Hypothetical
protein R102.10 protein.
Length = 323
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 88 EPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLESDN 134
EP + E+T Q + + K + + N +P+QNL FR S DN
Sbjct: 2 EPNI--EETCQLHTKFGKLFGTVTEPNNSPYQNLLDLSFRPSKVQDN 46
>AF016671-6|AAK73904.1| 979|Caenorhabditis elegans Adaptin or
adaptin-related proteinprotein 5, isoform b protein.
Length = 979
Score = 27.1 bits (57), Expect = 6.6
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 67 LYVHQMTKPTLQPKPMGTFRTEPKLKDEQTTQANK--RRQKKWNSKVVRNRTPFQNLQRN 124
+Y Q + L P+P TF EP+L +Q A K + +KK K T L++
Sbjct: 599 VYPSQQKQGPLVPRPPTTF--EPRLVAQQQEPAVKLVKEKKKKTGKKTTTATAVAKLKKK 656
Query: 125 RF--RRSLESDNLFVIRD 140
+ S NLF + D
Sbjct: 657 KSLPESSASKSNLFNMDD 674
>AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or
adaptin-related proteinprotein 5, isoform a protein.
Length = 1251
Score = 27.1 bits (57), Expect = 6.6
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 67 LYVHQMTKPTLQPKPMGTFRTEPKLKDEQTTQANK--RRQKKWNSKVVRNRTPFQNLQRN 124
+Y Q + L P+P TF EP+L +Q A K + +KK K T L++
Sbjct: 871 VYPSQQKQGPLVPRPPTTF--EPRLVAQQQEPAVKLVKEKKKKTGKKTTTATAVAKLKKK 928
Query: 125 RF--RRSLESDNLFVIRD 140
+ S NLF + D
Sbjct: 929 KSLPESSASKSNLFNMDD 946
>U50307-2|AAA92303.1| 558|Caenorhabditis elegans Serine palmitoyl
transferase familyprotein 2, isoform a protein.
Length = 558
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 16 QHNSTYIDKSDNILRVPAIAYDDQKTRRKYKK 47
+HN ++ + ILR AIAY + KT R YKK
Sbjct: 286 EHND--MESLERILR-DAIAYGNPKTHRPYKK 314
>U50307-1|AAK71365.1| 586|Caenorhabditis elegans Serine palmitoyl
transferase familyprotein 2, isoform b protein.
Length = 586
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 16 QHNSTYIDKSDNILRVPAIAYDDQKTRRKYKK 47
+HN ++ + ILR AIAY + KT R YKK
Sbjct: 314 EHND--MESLERILR-DAIAYGNPKTHRPYKK 342
>U39849-8|AAA81050.1| 479|Caenorhabditis elegans Hypothetical
protein C06A8.5 protein.
Length = 479
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 70 HQMTKPTLQP-KPMGTFRTEPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQN 120
H ++ + P KP F T +KD+ T++ +RR K K + TP N
Sbjct: 402 HSLSSIAVTPQKPAAKFTTRSSIKDD-TSEWAERRMKAQAEKKLATPTPRYN 452
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.132 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,038,745
Number of Sequences: 27539
Number of extensions: 158756
Number of successful extensions: 506
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 17
length of query: 164
length of database: 12,573,161
effective HSP length: 76
effective length of query: 88
effective length of database: 10,480,197
effective search space: 922257336
effective search space used: 922257336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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