GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000035-TA|BGIBMGA000035-PA|undefined
         (164 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0556 + 4139457-4140134                                           27   5.6  
03_01_0121 + 940338-940637,941023-941324,941417-941969,943889-94...    27   5.6  
07_03_0091 + 13312904-13313647                                         27   7.4  
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135     27   9.8  

>03_01_0556 + 4139457-4140134
          Length = 225

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 75  PTLQPKPMGTFRTEPKLKDEQTTQANK 101
           P  Q  P   FRTEP+L DE   +A K
Sbjct: 183 PGAQLVPFSAFRTEPRLPDEVLKKAFK 209


>03_01_0121 +
           940338-940637,941023-941324,941417-941969,943889-944848
          Length = 704

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)

Query: 139 RDLDEI--EFLGKDNDSVTVNAHV 160
           RD+DEI  EFLG D  +V  N HV
Sbjct: 492 RDMDEIDFEFLGHDKCAVQTNFHV 515


>07_03_0091 + 13312904-13313647
          Length = 247

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 74  KPTLQPKPMGTFRTEPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRN 124
           KP+ QP P  T + EPK   +   Q + ++  + + K      P Q+ Q N
Sbjct: 73  KPSPQPDPKPTPQPEPKQDPQPNPQPDPKQSPQPDPKPTPQPNPKQDPQPN 123


>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
          Length = 1275

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 6/48 (12%)

Query: 68  YVHQMTKPTLQPKPMGTFRTEPKLKDEQTTQANKRRQKKWNSKVVRNR 115
           YVH+  K     KPM    T+P  K + + QA KR+ K+  +K +R +
Sbjct: 755 YVHRKRKT--HSKPM----TKPNDKSKMSFQATKRKPKRIYNKNIRTQ 796


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.132    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,374,405
Number of Sequences: 37544
Number of extensions: 158379
Number of successful extensions: 383
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 11
length of query: 164
length of database: 14,793,348
effective HSP length: 77
effective length of query: 87
effective length of database: 11,902,460
effective search space: 1035514020
effective search space used: 1035514020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)