GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000035-TA|BGIBMGA000035-PA|undefined
         (164 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40409-8|AAA81389.1|  156|Caenorhabditis elegans Hypothetical pr...    30   0.94 
Z49937-3|CAA90186.2|  455|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U31537-1|AAA82991.1|  455|Caenorhabditis elegans variable abnorm...    29   1.6  
AC006605-3|AAK85442.1|  933|Caenorhabditis elegans Hypothetical ...    29   2.2  
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p...    28   2.9  
AL034393-9|CAA22314.1|  248|Caenorhabditis elegans Hypothetical ...    28   2.9  
Z79694-2|CAB01960.1|  173|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AF022968-5|AAB69884.1|  388|Caenorhabditis elegans Dehydrogenase...    27   5.0  
Z70309-9|CAH10784.1|  323|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AF016671-6|AAK73904.1|  979|Caenorhabditis elegans Adaptin or ad...    27   6.6  
AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or ad...    27   6.6  
U50307-2|AAA92303.1|  558|Caenorhabditis elegans Serine palmitoy...    27   8.8  
U50307-1|AAK71365.1|  586|Caenorhabditis elegans Serine palmitoy...    27   8.8  
U39849-8|AAA81050.1|  479|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U40409-8|AAA81389.1|  156|Caenorhabditis elegans Hypothetical
           protein F32A6.1 protein.
          Length = 156

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 16/61 (26%), Positives = 32/61 (52%)

Query: 92  KDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLESDNLFVIRDLDEIEFLGKDN 151
           KD+ T Q  KR + K+  +   ++     ++ ++F   LE DN  ++ ++ E+E   +D 
Sbjct: 12  KDKITDQRTKRDEVKYVVQQKMSQLATIKMEADQFMAELERDNKRLVENVKELETTVRDC 71

Query: 152 D 152
           D
Sbjct: 72  D 72


>Z49937-3|CAA90186.2|  455|Caenorhabditis elegans Hypothetical
           protein F14F3.1a protein.
          Length = 455

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 75  PTLQPKPMGTFRTEPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLE 131
           P ++PK  G F  +   K     + +   + +   K+ RNRT F  +Q     +  E
Sbjct: 181 PLIEPKTEGEFEKDEDQKPPTEPEDDAAARMRLKRKLQRNRTSFTQVQIESLEKEFE 237


>U31537-1|AAA82991.1|  455|Caenorhabditis elegans variable
           abnormal-3 protein.
          Length = 455

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 75  PTLQPKPMGTFRTEPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLE 131
           P ++PK  G F  +   K     + +   + +   K+ RNRT F  +Q     +  E
Sbjct: 181 PLIEPKTEGEFEKDEDQKPPTEPEDDAAARMRLKRKLQRNRTSFTQVQIESLEKEFE 237


>AC006605-3|AAK85442.1|  933|Caenorhabditis elegans Hypothetical
           protein C07H6.4 protein.
          Length = 933

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/46 (28%), Positives = 28/46 (60%)

Query: 88  EPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLESD 133
           E K  DE++ + +++++KK + +  R+R+  ++  R+R RR    D
Sbjct: 861 ESKKSDEKSERKSEKKEKKRDKERKRSRSRSRDRDRDRSRRDRSRD 906


>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
           protein C52B9.8 protein.
          Length = 1336

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 8   LAHDFPIPQHNSTYIDKSDNILRVPAIAYDDQ--KTRRKYKK 47
           LA+ +P+   +S ++   D+I+R  A+ Y DQ  K R  Y K
Sbjct: 66  LANAYPLNTWDSNFMKIDDDIIRKEALHYRDQDMKNREMYLK 107


>AL034393-9|CAA22314.1|  248|Caenorhabditis elegans Hypothetical
           protein Y18D10A.11 protein.
          Length = 248

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/52 (23%), Positives = 27/52 (51%)

Query: 87  TEPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLESDNLFVI 138
           T+ + + E   QA K +QK+W  ++  +R   + L   + +   E++ L ++
Sbjct: 57  TQLESRLEVVQQAAKAQQKRWEGELASSRAQNEQLSEEKSQLQKENEELLLV 108


>Z79694-2|CAB01960.1|  173|Caenorhabditis elegans Hypothetical
           protein C15A11.2 protein.
          Length = 173

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/63 (25%), Positives = 26/63 (41%)

Query: 38  DQKTRRKYKKTPKSTXXXXXXXXXXXXXXLYVHQMTKPTLQPKPMGTFRTEPKLKDEQTT 97
           DQ  + + K+ PK                  V  + KP L+ +P    + +PK K+E+ T
Sbjct: 79  DQLVKEQPKEQPKEQPKEQPKEQPKDQAKDVVKDIAKPPLKEQPKEQPKEQPKKKEEEKT 138

Query: 98  QAN 100
             N
Sbjct: 139 SKN 141


>AF022968-5|AAB69884.1|  388|Caenorhabditis elegans Dehydrogenases,
           short chain protein16 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 83  GTFRTEPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLES 132
           G F+TE    D Q      R QK WNS  V  +  +    RN F R+ E+
Sbjct: 219 GCFKTELLNNDAQ----RMRIQKIWNSLSVETKEEYGEDYRNDFERAWEA 264


>Z70309-9|CAH10784.1|  323|Caenorhabditis elegans Hypothetical
           protein R102.10 protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 88  EPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLESDN 134
           EP +  E+T Q + +  K + +    N +P+QNL    FR S   DN
Sbjct: 2   EPNI--EETCQLHTKFGKLFGTVTEPNNSPYQNLLDLSFRPSKVQDN 46


>AF016671-6|AAK73904.1|  979|Caenorhabditis elegans Adaptin or
           adaptin-related proteinprotein 5, isoform b protein.
          Length = 979

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 67  LYVHQMTKPTLQPKPMGTFRTEPKLKDEQTTQANK--RRQKKWNSKVVRNRTPFQNLQRN 124
           +Y  Q  +  L P+P  TF  EP+L  +Q   A K  + +KK   K     T    L++ 
Sbjct: 599 VYPSQQKQGPLVPRPPTTF--EPRLVAQQQEPAVKLVKEKKKKTGKKTTTATAVAKLKKK 656

Query: 125 RF--RRSLESDNLFVIRD 140
           +     S    NLF + D
Sbjct: 657 KSLPESSASKSNLFNMDD 674


>AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or
           adaptin-related proteinprotein 5, isoform a protein.
          Length = 1251

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 67  LYVHQMTKPTLQPKPMGTFRTEPKLKDEQTTQANK--RRQKKWNSKVVRNRTPFQNLQRN 124
           +Y  Q  +  L P+P  TF  EP+L  +Q   A K  + +KK   K     T    L++ 
Sbjct: 871 VYPSQQKQGPLVPRPPTTF--EPRLVAQQQEPAVKLVKEKKKKTGKKTTTATAVAKLKKK 928

Query: 125 RF--RRSLESDNLFVIRD 140
           +     S    NLF + D
Sbjct: 929 KSLPESSASKSNLFNMDD 946


>U50307-2|AAA92303.1|  558|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 2, isoform a protein.
          Length = 558

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 16  QHNSTYIDKSDNILRVPAIAYDDQKTRRKYKK 47
           +HN   ++  + ILR  AIAY + KT R YKK
Sbjct: 286 EHND--MESLERILR-DAIAYGNPKTHRPYKK 314


>U50307-1|AAK71365.1|  586|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 2, isoform b protein.
          Length = 586

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 16  QHNSTYIDKSDNILRVPAIAYDDQKTRRKYKK 47
           +HN   ++  + ILR  AIAY + KT R YKK
Sbjct: 314 EHND--MESLERILR-DAIAYGNPKTHRPYKK 342


>U39849-8|AAA81050.1|  479|Caenorhabditis elegans Hypothetical
           protein C06A8.5 protein.
          Length = 479

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 70  HQMTKPTLQP-KPMGTFRTEPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQN 120
           H ++   + P KP   F T   +KD+ T++  +RR K    K +   TP  N
Sbjct: 402 HSLSSIAVTPQKPAAKFTTRSSIKDD-TSEWAERRMKAQAEKKLATPTPRYN 452


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.132    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,038,745
Number of Sequences: 27539
Number of extensions: 158756
Number of successful extensions: 506
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 17
length of query: 164
length of database: 12,573,161
effective HSP length: 76
effective length of query: 88
effective length of database: 10,480,197
effective search space: 922257336
effective search space used: 922257336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)