Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000034-TA|BGIBMGA000034-PA|IPR005225|Small GTP-binding
protein domain, IPR006689|ARF/SAR superfamily,
IPR006688|ADP-ribosylation factor, IPR006687|GTP-binding protein SAR1,
IPR001806|Ras GTPase
         (197 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   8.7  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   8.7  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   8.7  

>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/29 (20%), Positives = 19/29 (65%)

Query: 1   MSFLGEAKKLVTEWKFHGLLDILKKLRSN 29
           ++ L +   L+T+W+++ +L + + + S+
Sbjct: 132 LTLLMDIDSLITKWRYNHVLMVQRMIGSS 160


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/29 (20%), Positives = 19/29 (65%)

Query: 1   MSFLGEAKKLVTEWKFHGLLDILKKLRSN 29
           ++ L +   L+T+W+++ +L + + + S+
Sbjct: 292 LTLLMDIDSLITKWRYNHVLMVQRMIGSS 320


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/29 (20%), Positives = 19/29 (65%)

Query: 1   MSFLGEAKKLVTEWKFHGLLDILKKLRSN 29
           ++ L +   L+T+W+++ +L + + + S+
Sbjct: 292 LTLLMDIDSLITKWRYNHVLMVQRMIGSS 320


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,544
Number of Sequences: 317
Number of extensions: 1497
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 197
length of database: 114,650
effective HSP length: 54
effective length of query: 143
effective length of database: 97,532
effective search space: 13947076
effective search space used: 13947076
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)