GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000033-TA|BGIBMGA000033-PA|IPR013069|BTB/POZ,
IPR000210|BTB
         (287 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    35   0.012
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    30   0.33 
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    28   1.8  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   3.1  
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    27   4.1  
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    26   5.4  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   5.4  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   9.5  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 35.1 bits (77), Expect = 0.012
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 137 HRAILMARCDPMKAMFQGHFRESNSR--VISLPGVKIYAFHILLCYMYTDKIPSVESARC 194
           HRAI M RC+    M  G F ESN    V+SLP        I+L ++YTDK   +     
Sbjct: 320 HRAI-MCRCEYFLDMLAGPFLESNQELPVLSLP-FSSSVVEIVLKFLYTDK-TDIAPELA 376

Query: 195 LELLELANRFCMNR 208
           L+++ +A+   +++
Sbjct: 377 LDVVYVADMLSLDK 390


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 10/123 (8%)

Query: 66  IDNEIRQASELLGIPELTRTSQLILTQQMLYDEAFLLQFHVSITRRFRDMYVERNTFADV 125
           +   + + + LL +P L       +++Q L      L     I + + + YV      D 
Sbjct: 707 LKENLSKLANLLELPHLAEVLPFSVSRQPL------LSLTNDILQLYNNFYVLCEETMDT 760

Query: 126 TFALDDGIHLAHRAILMARCDPMKAMFQGHFRESNS----RVISLPGVKIYAFHILLCYM 181
              L DG   AH   L  R +   + FQ    ESNS      ++L  + +    I+L ++
Sbjct: 761 VIKLKDGELKAHGLFLSLRSEYFSSYFQFVSMESNSFDIPITVNLSHLTVEHMSIVLRHV 820

Query: 182 YTD 184
           Y+D
Sbjct: 821 YSD 823


>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 59  SRYIQFNIDNEIRQASELLGIPELTRTSQLIL-TQQMLYDEAFLLQFHVSITRRFRDMY 116
           S  +  NID  I      L I  + RT  L+L T+ +  +EAF+     S T    D Y
Sbjct: 69  SELMDLNIDITIAMPCSNLRIDVVDRTKDLVLATEALTLEEAFIKDMPTSSTIYKNDRY 127


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/65 (21%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 68  NEIRQASELLGIP-ELTRTSQLILTQQMLYDEAFLLQFHVSITRRFRDMYVERNTFADVT 126
           +++ QA+ +L  P ++  +S +    +++  ++  +Q+  S  R+      E+  FA++T
Sbjct: 88  DKVEQATHILVTPSKIGESSSVEPITKLVLPDSQTIQYSFSFQRKRFIYEPEKGCFANIT 147

Query: 127 FALDD 131
           F +D+
Sbjct: 148 FPMDE 152


>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 56  PPESRYIQFNIDNEIRQASELLGIPEL-TRTSQLILTQQMLYDEAFLLQ 103
           PP + Y +F  DN + ++S   G P +    S+   +QQ       L+Q
Sbjct: 216 PPNNNYSKFRTDNYLARSSNRSGTPNIQNEQSRFFDSQQAQVQARALMQ 264


>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 38  LRNDEHDNGHDNGRDNADPPESRYIQFNIDNEIRQASELLGIPELTRTSQLILTQQMLY 96
           L+  +H+N H+    N    + RY         R+ + L+G PE    S+  +T++ +Y
Sbjct: 253 LQMSDHENTHEQFERNRMALQLRYFT------AREVARLMGFPESLEWSKSNVTEKCMY 305


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 152 FQGHFRESNSRVISLPGVKIYAFHILLCYMYTDKIPSVESARCLELLELA 201
           F+  +R  N+ +IS+  +  Y   ++L   Y  K+  + + +C+E +EL+
Sbjct: 227 FKADYRSPNT-IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 275


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 135 LAHRAILMARCDPMKAMFQGHFRESNSRVISLPGVKIYAFHILLCYMYTDKIP--SVESA 192
           L H   L    D  K++++   R+S   V     V++ +F   + ++  + I   S+E+ 
Sbjct: 158 LGHSKDLSQMRDEAKSLYEA--RKSYFTVALQYVVRVTSFRSSIDFIVIESICKFSIETF 215

Query: 193 RCLELLELANRFCMNRLVNLVEYK 216
           R  + L  +NR   ++L+ L+ Y+
Sbjct: 216 RLTDRLHESNRHINDQLIRLLSYE 239


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.139    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,308,467
Number of Sequences: 5004
Number of extensions: 54047
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 9
length of query: 287
length of database: 2,362,478
effective HSP length: 72
effective length of query: 215
effective length of database: 2,002,190
effective search space: 430470850
effective search space used: 430470850
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 53 (25.4 bits)