GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000033-TA|BGIBMGA000033-PA|IPR013069|BTB/POZ,
IPR000210|BTB
         (287 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      31   0.012
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   9.5  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   9.5  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 31.1 bits (67), Expect = 0.012
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 8/122 (6%)

Query: 104 FHVSITRRFRDMYVERNTFADVTFALDDGIHLAHRAILMARCDPMKAMFQGHFRESNSR- 162
           +  SIT  F ++  + + F DVT A D     AHR +L A C P    F+   + +  + 
Sbjct: 14  YQSSITSAFENLRDDED-FVDVTLACDGRSLKAHRVVLSA-CSP---YFRELLKSTPCKH 68

Query: 163 -VISLPGVKIYAFHILLCYMYTDKIPSVESARCLELLELANRFCMNRLVNLVEYKVIEEL 221
            VI L  V     H L+ ++Y  ++ +V        L+ A    ++ L    +    +EL
Sbjct: 69  PVIVLQDVAFSDLHALVEFIYHGEV-NVHQRSLSSFLKTAEVLRVSGLTQQADQTDRDEL 127

Query: 222 RH 223
            H
Sbjct: 128 SH 129


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 104 FHVSITRRFRDMYVERNTFADVTFALDDGIHLAHRAILMA 143
           +  ++T  F  + ++   F DVT A ++    AH+ +L A
Sbjct: 18  YQSNMTSVFHQL-LQTEAFVDVTLACNEASLKAHKVVLSA 56


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 105 HVSITRRFRDMYVERNTFADVT 126
           HV + R  R+ Y E N   + T
Sbjct: 383 HVEVARLIRNYYFESNKIDETT 404


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 105 HVSITRRFRDMYVERNTFADVT 126
           HV + R  R+ Y E N   + T
Sbjct: 383 HVEVARLIRNYYFESNKIDETT 404


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.139    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,783
Number of Sequences: 429
Number of extensions: 2937
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 5
length of query: 287
length of database: 140,377
effective HSP length: 57
effective length of query: 230
effective length of database: 115,924
effective search space: 26662520
effective search space used: 26662520
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 43 (21.4 bits)