Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000032-TA|BGIBMGA000032-
PA|IPR005135|Endonuclease/exonuclease/phosphatase, IPR000300|Inositol
polyphosphate related phosphatase
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29400.1 68416.m03694 exocyst subunit EXO70 family protein si...    33   0.60 
At5g24290.2 68418.m02858 integral membrane family protein contai...    32   1.0  
At5g24290.1 68418.m02857 integral membrane family protein contai...    32   1.0  
At3g62080.1 68416.m06975 SNF7 family protein contains Pfam domai...    30   4.2  
At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II...    29   9.7  
At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II...    29   9.7  

>At3g29400.1 68416.m03694 exocyst subunit EXO70 family protein
           similar to EXO70 protein (GI:2352998) [Mus musculus];
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit
          Length = 658

 Score = 33.1 bits (72), Expect = 0.60
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 65  EDFSSPEKFTALGNMYFAHSSLVDLKIWDFDLKAYVDVVGKEIH-SGNIENASTKEKAKF 123
           E+ SSPEKF A+   +++ +S+++  + +   K Y DV  + I    NI   + K     
Sbjct: 454 ENSSSPEKFLAMTRHFYSITSVLEANLQE-KSKLYKDVSLQHIFLLNNIHYMTRKVLKSE 512

Query: 124 PQHFFPECKWSRK 136
            +H F + KW+RK
Sbjct: 513 LRHIFGD-KWNRK 524


>At5g24290.2 68418.m02858 integral membrane family protein contains
           Pfam domain PF01988: Integral membrane protein
          Length = 534

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 572 PESADSPNAEGSDVEGRSTEPNRDRSVSPTQLKHRLDRLL-TGREAELGSSD 622
           P   +     G D E    E N +RS+S ++ K  L++LL T    ELG+ D
Sbjct: 115 PNVENKRQRNGEDCEIEEEEENNERSLSDSEEKSNLEKLLGTQENYELGNED 166


>At5g24290.1 68418.m02857 integral membrane family protein contains
           Pfam domain PF01988: Integral membrane protein
          Length = 550

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 572 PESADSPNAEGSDVEGRSTEPNRDRSVSPTQLKHRLDRLL-TGREAELGSSD 622
           P   +     G D E    E N +RS+S ++ K  L++LL T    ELG+ D
Sbjct: 131 PNVENKRQRNGEDCEIEEEEENNERSLSDSEEKSNLEKLLGTQENYELGNED 182


>At3g62080.1 68416.m06975 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 423

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 529 LNETMFRIPHVEITTADAHYDDLCVSDVDDALLSVRRCLD-------PYTPESADSPNAE 581
           L ET+     VE     A Y D+   D+++ LL +   L+       P T ++ADS    
Sbjct: 330 LEETIESQKQVEKALESAPYPDIDDEDIEEELLELEMDLESESSQVLPATSDTADSLTEM 389

Query: 582 GSDVE-GRSTEPNRDRSVSPTQLKHRLDRLL 611
            S+++ G++ +   +++  P Q+K    ++L
Sbjct: 390 FSELKLGKTKQTLEEQATEPAQMKDSGKKIL 420


>At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 613

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 4/27 (14%)

Query: 320 EALRPHLF----EFPVKFPPTYPFEED 342
           E  R H+F    E P+KFPPTY +E D
Sbjct: 502 ELRRGHVFDGWREGPIKFPPTYKYEFD 528


>At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 646

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 4/27 (14%)

Query: 320 EALRPHLF----EFPVKFPPTYPFEED 342
           E  R H+F    E P+KFPPTY +E D
Sbjct: 535 ELRRGHVFDGWREGPIKFPPTYKYEFD 561


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,442,853
Number of Sequences: 28952
Number of extensions: 572096
Number of successful extensions: 1229
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1227
Number of HSP's gapped (non-prelim): 8
length of query: 656
length of database: 12,070,560
effective HSP length: 86
effective length of query: 570
effective length of database: 9,580,688
effective search space: 5460992160
effective search space used: 5460992160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)