GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000032-TA|BGIBMGA000032-
PA|IPR005135|Endonuclease/exonuclease/phosphatase, IPR000300|Inositol
polyphosphate related phosphatase
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    29   2.0  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    28   3.6  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   8.2  

>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 7   SEFLQAVSRMDPKFIALHLQEVGGKAYEKSMQ 38
           +++LQ V+ MD  FI  H+  +   AY  SMQ
Sbjct: 317 AKYLQEVTLMDEIFIGAHISFIAATAYYLSMQ 348


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 565 RCLDPYTPESADSPNAEGSDVEGRSTEPN-RDRSVSPTQLKHRLDRLLTGR-EAELGSSD 622
           R LD +  E +  PN +G+  +  S  PN     VS +Q  H        R  +EL   D
Sbjct: 3   RSLDNFQNEDSSHPNEQGAWADSGSGFPNPNSNDVSNSQRNHHRHMFPLARIRSELSEQD 62

Query: 623 ST 624
           S+
Sbjct: 63  SS 64


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 324 PHLFEFPVKFPPTYPFE 340
           P   E P+ FPPTY F+
Sbjct: 781 PFFSELPITFPPTYKFD 797


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,179
Number of Sequences: 5004
Number of extensions: 107281
Number of successful extensions: 237
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 4
length of query: 656
length of database: 2,362,478
effective HSP length: 77
effective length of query: 579
effective length of database: 1,977,170
effective search space: 1144781430
effective search space used: 1144781430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)