GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000032-TA|BGIBMGA000032-
PA|IPR005135|Endonuclease/exonuclease/phosphatase, IPR000300|Inositol
polyphosphate related phosphatase
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)                 31   2.2  
SB_25209| Best HMM Match : Astacin (HMM E-Value=7.69999e-41)           31   2.9  
SB_56122| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   6.7  
SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)                 29   8.9  

>SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)
          Length = 607

 Score = 31.5 bits (68), Expect = 2.2
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 6   TSEFLQAVSRMDPKFIALHL--QEVGGKAYEKSMQYVKDFVQRLCDCPELRLFDKIRIYL 63
           TSE L  + R  P+F  L +  ++    AYE S     D +  L +CP L+ F  +   L
Sbjct: 147 TSEVLSELIRQCPQFEHLEILHKDEEDDAYECSFLISTDLIAALVNCPNLKSFHCVNATL 206

Query: 64  DED 66
            +D
Sbjct: 207 LDD 209


>SB_25209| Best HMM Match : Astacin (HMM E-Value=7.69999e-41)
          Length = 533

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 269 RDLPTPPSHYRLVSYQGQSGRLVVEGFLARRKRKPSYTASSRRLQRYDRELEALR 323
           ++L T  +H R+ ++ GQ+GR    GF AR +   S   ++   Q+Y R  EA R
Sbjct: 467 QNLTTSGNHLRIATHSGQAGRKGGAGFKARYQACTSLRVAADS-QKYFRGSEAAR 520


>SB_56122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 577 SPNAEGSDVEGRSTEPNRDRSVSPTQLKHRLDRLLTGREAELG 619
           S  +E SDV   +T P R R     +LK   +R+LT  ++ +G
Sbjct: 153 SDGSEESDVSTPATSPKRKRPSKKLELKSSTNRVLTHEDSVVG 195


>SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)
          Length = 410

 Score = 29.5 bits (63), Expect = 8.9
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 563 VRRCLDPYTPESADSPNAEGSDVEGRSTEP---NRDRSVSP 600
           V RC  P  P +A SP +    V G +  P   + DRSVSP
Sbjct: 243 VARCPAPAVPVAAGSPGSRAVSVAGGAGAPVATSADRSVSP 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,553,485
Number of Sequences: 59808
Number of extensions: 808476
Number of successful extensions: 1982
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1981
Number of HSP's gapped (non-prelim): 4
length of query: 656
length of database: 16,821,457
effective HSP length: 87
effective length of query: 569
effective length of database: 11,618,161
effective search space: 6610733609
effective search space used: 6610733609
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)