GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000030-TA|BGIBMGA000030-PA|IPR008908|Sarcoglycan
alphaepsilon, IPR006644|Dystroglycan-type cadherin-like
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy...    33   0.12 
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   1.5  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    28   2.7  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   4.6  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    27   6.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   6.1  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   6.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   8.1  

>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 419 SLKLLNEANIINYEIKDPIVDIADGADDYAPIDANGTGFLSDTTGYLSMKPDTD 472
           S++ LNE  +IN  IK PI++ AD AD     + +    LSD  G + ++ D D
Sbjct: 34  SVEALNEKEMIN-TIKSPIIETADTADQENESEGSDEVELSDLEG-IELEEDAD 85


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 320 HYAAVSQKSARAELGRRGTDSSEQPQ--LADNNSSKSLGASPNNSIARSYSPKSTPNLAS 377
           H     ++    + G + TDSS+QP   +A++ S+++  ASP  +     S  S  +   
Sbjct: 334 HSTQTVEEPIDTKAGEKLTDSSKQPSPPVAEHFSNETFSASPKGAETDVKSEGSNNHEQG 393

Query: 378 NYNRPQ 383
           ++N P+
Sbjct: 394 SFNEPK 399


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 338 TDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLAS 377
           T S     L+D  +  S+   PNN +A S +P   P+  S
Sbjct: 288 TSSPSTASLSDKKNPGSVHIRPNNEVAPSSAPSRAPSTTS 327


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 332 ELGRRGTDSSEQPQ-LADNNSSKSLGASPNNSIARSYS 368
           ELG      S+QP  L+ ++SSKS+ +SP+ SI  S S
Sbjct: 551 ELGENIPAISKQPSYLSISSSSKSINSSPSPSIQLSVS 588


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 421 KLLNEANIINY-EIKDPIVDIADGADDYAPIDANGTGFLSDTTGYLSMKPDTDGID 475
           K L    +I++ ++ D   D  DG+D+      +   F    TGY+S    ++ +D
Sbjct: 47  KCLGSDKLISFNQVNDDYCDCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVD 102


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 344 PQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTASTRGH 403
           P     N+  S   +P +   +  +P +TP + +N     P   A  +  R+   +T GH
Sbjct: 647 PPSGQVNAPMSQTPNPISFAYQHGTPLATPTMRANSFNSYPASSAEPI--RRPATTTVGH 704

Query: 404 TPELLHDPSRT 414
           TP L    + T
Sbjct: 705 TPNLYSPKTNT 715


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 325 SQKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQP 384
           S+ S+ +    + + SS     + ++SS S  +S + S ++S S  S+ +  ++   P  
Sbjct: 176 SKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITS-TTPAS 234

Query: 385 PPYAGALHHRKSTAST 400
              +GA+     TAST
Sbjct: 235 SSSSGAIVSNAKTAST 250


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 9/72 (12%)

Query: 337 GTDSSEQPQLADNNSS---KSLGASPNNSIAR--SYSPKSTP----NLASNYNRPQPPPY 387
           G D+S  P   + ++S       ++PN+ ++   S+ P S      +L S+YN P PPP 
Sbjct: 136 GMDASSAPASQEPSASGVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPP 195

Query: 388 AGALHHRKSTAS 399
             A+  + + A+
Sbjct: 196 PPAVEDQAADAN 207


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,178
Number of Sequences: 5004
Number of extensions: 91807
Number of successful extensions: 301
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 13
length of query: 507
length of database: 2,362,478
effective HSP length: 76
effective length of query: 431
effective length of database: 1,982,174
effective search space: 854316994
effective search space used: 854316994
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)