Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000030-TA|BGIBMGA000030-PA|IPR008908|Sarcoglycan
alphaepsilon, IPR006644|Dystroglycan-type cadherin-like
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0007 - 48497-48880 36 0.10
09_06_0332 + 22382508-22383214,22383576-22383631,22383673-223840... 32 0.94
03_06_0284 + 32836171-32836377,32836466-32836568,32836681-328367... 31 2.2
03_02_0119 - 5725588-5726688,5726793-5726894 31 2.2
02_01_0348 - 2506007-2506909,2507003-2508120,2508230-2508883,250... 31 2.9
03_05_0267 - 22538631-22539452 30 3.8
02_05_0740 - 31404004-31404180,31404365-31405261,31405351-314059... 30 3.8
09_06_0127 + 21019266-21019670 30 5.0
06_01_0743 - 5534743-5534985,5535075-5535172,5535286-5535429,553... 30 5.0
10_08_0699 - 19965728-19966006,19966693-19966908 29 6.6
02_05_0282 - 27454714-27455814 29 6.6
02_04_0577 - 24011542-24011906,24012285-24012385,24013029-240132... 29 6.6
01_01_0871 + 6813091-6814212 29 6.6
09_04_0318 - 16620177-16620582,16620686-16620765,16620873-166212... 29 8.7
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 29 8.7
04_03_0789 + 19660713-19660896,19661405-19662027 29 8.7
04_01_0288 + 3824337-3826385 29 8.7
>02_01_0007 - 48497-48880
Length = 127
Score = 35.5 bits (78), Expect = 0.10
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 359 PNNSIARSYSPKSTPNLASNYNRPQPPPYAGA 390
P+ ++ S S KSTP L N N P PPP+ GA
Sbjct: 64 PDAALIASPSTKSTPPLLPNLNYPPPPPHDGA 95
>09_06_0332 +
22382508-22383214,22383576-22383631,22383673-22384004,
22384395-22384445
Length = 381
Score = 32.3 bits (70), Expect = 0.94
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 340 SSEQPQLADNNSSKSLGASPNN---SIARSYSPKSTPNLASNYNRPQ---PPPYAGALHH 393
++E PQL + S + P + I +SP +PN A Y P PPPY+
Sbjct: 270 NTEFPQLGSHGSPVPVEQQPQSIAQHIPGPWSPAQSPN-AIGYRPPDGSMPPPYSPGHAG 328
Query: 394 RKSTASTRGHTPELLHDPSR 413
+S HTP+ PSR
Sbjct: 329 APIRSSVFMHTPQQFAMPSR 348
>03_06_0284 +
32836171-32836377,32836466-32836568,32836681-32836757,
32836846-32837037,32837144-32837263,32837350-32837412,
32837537-32837671,32837827-32837991,32838104-32838181,
32840303-32840389,32840548-32840619,32840925-32840951,
32842292-32842390,32843143-32843213,32843710-32843838,
32843936-32844012,32844186-32844226,32844319-32844393,
32844525-32844673,32844766-32844870,32844948-32845023,
32845465-32845541,32845761-32846529
Length = 997
Score = 31.1 bits (67), Expect = 2.2
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 344 PQLADNNSSKSLGASPNNSIARSYS--PKSTPNLASNYNRPQPPPYAGALHHR 394
P++ NN ++ G SPN Y+ P P S + +P Y+G H R
Sbjct: 863 PRMHQNNRMQNSGFSPNQPHPNQYAGFPPQRPMQNSGFTPQRPAQYSGFPHQR 915
>03_02_0119 - 5725588-5726688,5726793-5726894
Length = 400
Score = 31.1 bits (67), Expect = 2.2
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 327 KSARAELGRRGTDSSEQPQLAD--NNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQP 384
++ARAE+G E + A+ + +L + I R P++TP+L + P
Sbjct: 311 EAARAEIGDLRFSLEEAVRRAELAEEAKAALERALREEIQRKAQPRNTPSLTTTTTTPAK 370
Query: 385 PPYAG 389
PP G
Sbjct: 371 PPLTG 375
>02_01_0348 -
2506007-2506909,2507003-2508120,2508230-2508883,
2508920-2509046
Length = 933
Score = 30.7 bits (66), Expect = 2.9
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 332 ELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGAL 391
E+G + E+ + AD + S S ++ + S S S+ + S+ ++ PPP A
Sbjct: 343 EIGEENAEEEEEEEGADEEENDS---SDDSDSSNSSSDNSSDSSESDDSKTVPPPTVLAD 399
Query: 392 HHRKSTAST 400
RK TAS+
Sbjct: 400 LKRKKTASS 408
>03_05_0267 - 22538631-22539452
Length = 273
Score = 30.3 bits (65), Expect = 3.8
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 351 SSKSLGASPNNSIARSYSPKSTPNLASNYNRPQP-PPYAG 389
S S ASP+ S AR+ P S+P+ + RP P PP G
Sbjct: 184 SPSSPPASPSPSPARTSPPSSSPSRGCSARRPTPSPPVLG 223
>02_05_0740 -
31404004-31404180,31404365-31405261,31405351-31405978,
31405997-31406468,31406575-31407052
Length = 883
Score = 30.3 bits (65), Expect = 3.8
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 324 VSQKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQ 383
+ +++A E G G D E D++SS S S +NSI S S S +
Sbjct: 243 IGEENAEEEEGEEGADEEENDSSDDSDSSNS---SSDNSIDSSESDDS---------KTV 290
Query: 384 PPPYAGALHHRKSTAST 400
PPP A RK TAS+
Sbjct: 291 PPPTVLADLKRKKTASS 307
>09_06_0127 + 21019266-21019670
Length = 134
Score = 29.9 bits (64), Expect = 5.0
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 336 RGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPP 386
R D++EQ L +S+ + G +P+ + + S ST + + + N P PPP
Sbjct: 32 RELDAAEQLVLLSGSSTSTTGTTPSAAASGS---SSTASSSRSVNAPPPPP 79
>06_01_0743 -
5534743-5534985,5535075-5535172,5535286-5535429,
5535594-5535643,5535733-5535787,5536595-5536686,
5536758-5536806,5536883-5537079,5537160-5537302,
5537625-5537777,5537848-5537896,5537974-5538071,
5538172-5538327,5538434-5538791,5538873-5538943,
5539134-5539217,5539307-5539468,5539534-5539677,
5539769-5540004,5540990-5541374
Length = 988
Score = 29.9 bits (64), Expect = 5.0
Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 18/140 (12%)
Query: 372 TPNLASNYNRPQPPPYAGALHHRKSTASTRGHTPELLHDPSRTVLEESLKLLNEA-NIIN 430
TP +A+ + P+ P H T TP + DP ++ + LL EA + +
Sbjct: 754 TPTVATPFREPRYPLGGETPMHPSRTPLHPYQTP--MRDPGGITGKKEILLLGEAVQLTS 811
Query: 431 YEI------KDPIVDIADGADDYAP-------IDANGTGFLSDTTGYLSMKPDTDGIDV- 476
E+ K P +D + Y P + N +L T G M P G+D+
Sbjct: 812 QELHQLGHMKHPHLDQGNAPSPYVPSTPVGQPMTPNSASYLPGTPGGQPMTPGNVGMDIM 871
Query: 477 -PDLGKFGPASDSTPKVHVS 495
P +G G + P V V+
Sbjct: 872 SPIIGGEGEGNWLLPDVLVN 891
>10_08_0699 - 19965728-19966006,19966693-19966908
Length = 164
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 326 QKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPN---LASNYNRP 382
++SA E G+R D +Q AD ++ +GA P + P T L S+ N
Sbjct: 13 RRSAAQERGKRELDGMDQEVWADMGTAVRVGAPPLLHLCTQLLPHPTAAGKLLLSSSNGM 72
Query: 383 QPP 385
QPP
Sbjct: 73 QPP 75
>02_05_0282 - 27454714-27455814
Length = 366
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 355 LGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGA 390
+GA+PN + S P P+ A++ RP PP AGA
Sbjct: 6 MGANPNPN-GSSNQPPPPPSSAASAQRPIAPPAAGA 40
>02_04_0577 -
24011542-24011906,24012285-24012385,24013029-24013287,
24014176-24014264,24015331-24015419
Length = 300
Score = 29.5 bits (63), Expect = 6.6
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 336 RGTDSSEQPQLADNNSSKSLGASPNNSIA--RSYSPKSTPNLASNYNRPQPPPYA 388
RG S P+ + S SP + RSYS P A +Y+R PPP A
Sbjct: 127 RGRSRSRSPRYRRSPSYGRRSYSPRDRSPKRRSYSRSPPPARARSYSRSPPPPRA 181
>01_01_0871 + 6813091-6814212
Length = 373
Score = 29.5 bits (63), Expect = 6.6
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 337 GTDSSEQPQLA-DNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPP 386
G + P + D+ A+ S+ RS+ P + A N+ QPPP
Sbjct: 222 GASKNASPATSYDSGEESHAAAASPTSVLRSFPPSAVVATADTANKKQPPP 272
>09_04_0318 -
16620177-16620582,16620686-16620765,16620873-16621213,
16621298-16621559
Length = 362
Score = 29.1 bits (62), Expect = 8.7
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 324 VSQKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQ 383
+ ++ AE GRR + + + + SS+ G+SP ++ + P P L + P
Sbjct: 24 MGRREEAAEAGRRDHEVRRELEFG-SMSSRCGGSSPEPTVRLTLLPM-VPGLGLPW--PP 79
Query: 384 PPPYAGALHHRKSTASTRG 402
PPP + H + ASTRG
Sbjct: 80 PPPPSSESRHLE--ASTRG 96
>04_04_1630 -
34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 29.1 bits (62), Expect = 8.7
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 344 PQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPP 386
P A +++ ++G ++R +SPK P+ + + P PPP
Sbjct: 235 PFPAPTSTAIAMGKPKQQVLSRFFSPKPRPSAPATADDPPPPP 277
>04_03_0789 + 19660713-19660896,19661405-19662027
Length = 268
Score = 29.1 bits (62), Expect = 8.7
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 331 AELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPP--PYA 388
A + SS PQ+ D ++ + + A P + + S S +T +S + P PY
Sbjct: 198 ATMSSSTVSSSSAPQILDFSTQQLIRAGPPSPMPSSGSGSATAAASSTTSASSPGAWPYG 257
Query: 389 GALHHRKSTAS 399
G+ +K ++S
Sbjct: 258 GSERKKKDSSS 268
>04_01_0288 + 3824337-3826385
Length = 682
Score = 29.1 bits (62), Expect = 8.7
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 392 HHRKSTASTRGHTPELLHDPSRTV-LEESLKLLNEANIINYEIKDPI-VDIADGADDYAP 449
+H+ + A+T H + L+D S V + L + + ++ N EI D + + D + +AP
Sbjct: 394 YHKITKATTSHHWFKTLNDLSTLVGFADWLDMQHCSS--NLEIPDKVKTTLQDMHERFAP 451
Query: 450 IDANGTGFLSDTTGYLSMKPD 470
D N G L G L+M D
Sbjct: 452 NDLNTMGLLRHNWGMLAMGED 472
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.132 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,986,869
Number of Sequences: 37544
Number of extensions: 593666
Number of successful extensions: 1888
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1881
Number of HSP's gapped (non-prelim): 19
length of query: 507
length of database: 14,793,348
effective HSP length: 85
effective length of query: 422
effective length of database: 11,602,108
effective search space: 4896089576
effective search space used: 4896089576
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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