Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000030-TA|BGIBMGA000030-PA|IPR008908|Sarcoglycan
alphaepsilon, IPR006644|Dystroglycan-type cadherin-like
(507 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19610| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.008
SB_48385| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.077
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042) 36 0.10
SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5) 34 0.23
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.41
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42) 33 0.54
SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022) 32 1.3
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.2
SB_26689| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.2
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044) 31 2.2
SB_21594| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.9
SB_33966| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.9
SB_52076| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.8
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064) 30 3.8
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 5.1
SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.1
SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9) 30 5.1
SB_23593| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-15) 30 5.1
SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_28689| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 29 6.7
SB_15995| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12) 29 6.7
SB_11849| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12) 29 6.7
SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27) 29 6.7
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.8
SB_16527| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.8
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.8
SB_51315| Best HMM Match : OmpA (HMM E-Value=2.5) 29 8.8
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.8
>SB_19610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 39.1 bits (87), Expect = 0.008
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 122 HEVELKIDNLNVEDLLDAHRMNRLKDILRTKLWTESSQDLYATFLASAIDLGARLPLKPS 181
++ E I + N++ L +++ + K + +LW + + T + S +D G R+P+ P+
Sbjct: 28 YQAEFTIKSANLDIFLGSNQPDTFKSQVE-ELWKAPPRGIQVTNVESLLDRGGRVPVPPN 86
Query: 182 DGEGLVVRLGSSHPFSSELKRLREEVRPLSKLPSCPRDYKRTTVERLFRDAGLTLDWCRF 241
EG+ + +G ++S L+ S CP+ K ++ F + +DWC+F
Sbjct: 87 K-EGVFIAVGGEKRYTS-LE---------SDYVGCPQGLK-PDAQKFF--SQWVIDWCKF 132
Query: 242 EL 243
+L
Sbjct: 133 QL 134
>SB_48385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 35.9 bits (79), Expect = 0.077
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 340 SSEQPQLADNNSSKSLG-ASPNNS-----IARSYSPKSTPNLASNYNRPQPPPYAGALHH 393
SS P DNN+S + A+ NN+ IA Y+ ST +A++YN P+A ++
Sbjct: 281 SSTVPIANDNNASSTASIANDNNASSTAPIANDYNASSTAPIANDYNASSTAPFANYYNN 340
Query: 394 RKSTA 398
STA
Sbjct: 341 TSSTA 345
>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
Length = 792
Score = 35.5 bits (78), Expect = 0.10
Identities = 17/65 (26%), Positives = 36/65 (55%)
Query: 337 GTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKS 396
G+D+S + + ++S+S SP S +RS+SP +P + +Y+R + ++ ++ +
Sbjct: 410 GSDASSRSRSYSRSASRSYSRSPVRSWSRSHSPSLSPQRSRSYSRSRSRSFSKSISGSPT 469
Query: 397 TASTR 401
TR
Sbjct: 470 PKYTR 474
>SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5)
Length = 262
Score = 34.3 bits (75), Expect = 0.23
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 380 NRPQPPPYAGALHHRKSTASTRGHTPE 406
NRP+PPP G HH++S +T + P+
Sbjct: 152 NRPKPPPTIGPKHHQRSAQTTTNNRPK 178
Score = 31.1 bits (67), Expect = 2.2
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 326 QKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNN--SIARSYSPKSTPNLASNY--NR 381
Q+SA+ R S P + + +S NN + + PK LA N NR
Sbjct: 166 QRSAQTTTNNRPKTS---PTIGPKHHQRSAQNITNNRPKTSPTIGPKHHQQLAQNITNNR 222
Query: 382 PQPPPYAGALHHRKSTASTRGHTPE 406
P+ P G HH++S + + P+
Sbjct: 223 PKTSPTIGPKHHQQSAQNNTNNRPK 247
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 33.5 bits (73), Expect = 0.41
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 344 PQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGAL-HHRKSTASTRG 402
P A + ++S+ +P+ R Y P+ P + P PP Y G + HR A TRG
Sbjct: 1851 PMHAGSIPAQSIPVAPSRG-TRQYPPRGAPMMHRGRGHP-PPQYTGGVPAHRAPPAPTRG 1908
Query: 403 HTP 405
P
Sbjct: 1909 GPP 1911
>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
Length = 1078
Score = 33.1 bits (72), Expect = 0.54
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 347 ADNNSSKSLGASPNNSIARS----YSP-KSTPNLASNYNRPQPPPYAGALHHRKSTASTR 401
+ + S+ GA P SI+ S Y+P PNL SNY P YA H S++S
Sbjct: 931 SSSGHSEQKGAHPPRSISYSVQGSYNPCVQGPNLPSNYRYPTHSSYASYAHENHSSSSML 990
Query: 402 GHTPELLHDP 411
P H P
Sbjct: 991 QEMPN--HGP 998
>SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)
Length = 664
Score = 31.9 bits (69), Expect = 1.3
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 344 PQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTASTRGH 403
P + + S + L P+ + RS P +++RP PP +GA S++
Sbjct: 499 PPITSSASKRILPPLPSKDLKRSLPPLPP----KDFSRPLPPLNSGAAIKPLPPLSSKAA 554
Query: 404 TPELLHDPSRTVLEESLKLLNEANIIN 430
T L PS+ L +K + ++ IN
Sbjct: 555 TKTLPQPPSKDDLRAGVKEMENSSEIN 581
>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1378
Score = 31.1 bits (67), Expect = 2.2
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 328 SARAELGRR--GTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPP 385
S+ A LG T S + +N S L +SP+ + P S P + N P PP
Sbjct: 184 SSPASLGDELESTLSLRSEPIRTSNDSSKLNSSPSKGQTQ---PSSRPPIGENTYVPPPP 240
Query: 386 PYAGALH 392
P+A H
Sbjct: 241 PHATPTH 247
>SB_26689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1176
Score = 31.1 bits (67), Expect = 2.2
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Query: 134 EDLLDAHRMNRLKDI-LRTKLW---TESSQDLYATFLASAIDLGARLPLKPSDGEGLVVR 189
E LL RL+D+ RT L T S TFL ID L ++ S+G ++
Sbjct: 510 EALLKNMSSTRLRDLNFRTPLHSAVTSGSIQTVKTFLGRTIDSNVLLEMQDSNGNTVLHH 569
Query: 190 LGSSHPFSSELKRLREEVRPLSKLPSCPRDYKRTTVERLFRDAGLTLD 237
++PFS E ++ S D KR ++ + R L +D
Sbjct: 570 SVPTYPFSFENATFLLRIQESSTRKRENDDRKRNDLKTISRVERLEID 617
>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
Length = 933
Score = 31.1 bits (67), Expect = 2.2
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 327 KSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPP 386
+SA L R S +P + +G + S KSTP + PP
Sbjct: 117 RSASPRLSERSATISSEPVHEGTKETSDVGDRKEKETPQEGSVKSTPADIVVHESSPKPP 176
Query: 387 YAGALHHRKSTASTRGHTPELLHDPSRTVLE 417
G H KS + + LL +P R+ +E
Sbjct: 177 NTGIRSHNKSPLRSPKASRALL-EPGRSSIE 206
>SB_21594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1075
Score = 30.7 bits (66), Expect = 2.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 376 ASNYNRPQPPPYAGALHHRKSTASTRGHTPELLHDPSRTVLEESLKL 422
A + R +PP Y L R++T+S P +H P + + L L
Sbjct: 338 AQHLQRQKPPTYTRHLLARQATSSQESFCPASIHSPGARITQVDLAL 384
>SB_33966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 30.7 bits (66), Expect = 2.9
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 325 SQKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQP 384
S K + L ++G+D + P + DN + + A S R ++ K +P+ + R
Sbjct: 22 SCKRPSSTLSKKGSDW-KPPVIRDNTDNTAAPACRQES--REFANKGSPDKTKHSTRVGV 78
Query: 385 PPY-AGA-----LHHRKSTASTRGHTPELLHDPSRTVLEESLKLLNEANIINYEIK 434
P +GA L H K T ++ + ++ E+L L E N + YE+K
Sbjct: 79 VPVISGARIQEDLKHYKQQTETLESLLATVNHNNENLMNENLLLKAELNKLKYELK 134
>SB_52076| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 30.3 bits (65), Expect = 3.8
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 350 NSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTASTRGHTPELLH 409
N+++ L +PN + + + P TP+LA N Q P A + S A TP L
Sbjct: 114 NTTQPLAMNPNTTPSLAMYPNKTPSLAMYPNTTQ--PLAMYPYTTSSLAMNPNTTPSLAM 171
Query: 410 DPSRTVLEESLKLLNEANIINYEIKDPIVDIADGADDYAPIDANGTGFLS---DTTGYLS 466
P+ T S+ ++ Y P + + + N T L+ +TT L+
Sbjct: 172 YPN-TTPSLSMNPNTTPSLAMYPNTTPSLAMYPNTTQSLAMYPNTTPSLAMYPNTTPSLA 230
Query: 467 MKPDT 471
M P+T
Sbjct: 231 MNPNT 235
Score = 30.3 bits (65), Expect = 3.8
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 344 PQLADN-NSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQP 384
P A N N+++ L PN + + P +TP+LA N N QP
Sbjct: 357 PSFAMNPNTTQPLAMYPNTTQPLAMYPNTTPSLAMNPNTTQP 398
Score = 29.5 bits (63), Expect = 6.7
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 350 NSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTASTRGHTPELLH 409
N++ SL PN + + P +TP+ A N N Q P A + + A TP L
Sbjct: 334 NTTPSLAMYPNTTQPLAMYPNTTPSFAMNPNTTQ--PLAMYPNTTQPLAMYPNTTPSLAM 391
Query: 410 DPSRT 414
+P+ T
Sbjct: 392 NPNTT 396
>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
Length = 1230
Score = 30.3 bits (65), Expect = 3.8
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 320 HYAAVSQKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNY 379
+YAA Q +A G D +PQ A SS+ L + P P A Y
Sbjct: 648 YYAAYMQNGFKASPGFGWYDEYSRPQPAQQYSSQGLPPQAPQQYSWQGPP---PQAAKQY 704
Query: 380 NRPQPPPYA 388
+PPP A
Sbjct: 705 YSQEPPPQA 713
>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4248
Score = 29.9 bits (64), Expect = 5.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 367 YSPKSTPNLASNYNRPQPPPYAGALHH 393
Y PK+T AS+Y P PY G+L H
Sbjct: 849 YGPKTTEMTASSYFGPGFEPYLGSLRH 875
>SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 29.9 bits (64), Expect = 5.1
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 339 DSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPP 386
++S+ ++DNN+S + S NN+ + + + + + + +PQ PP
Sbjct: 266 NTSDNNNISDNNNSDNNNTSDNNNTSDNNNSDNNNTSDNKHQQPQVPP 313
>SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)
Length = 496
Score = 29.9 bits (64), Expect = 5.1
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 329 ARAELGRRGTDSSEQPQLADNNSS--KSLGASPNNSIARSYSPKSTPN-LASNYNRPQPP 385
+R+E+ T SS L S K L + ++ + +S S S N + NRP PP
Sbjct: 154 SRSEMPLPPTPSSSSESLPSGTKSPTKPLRSRSSDELVKSNSESSKSNPVPRPRNRPPPP 213
Query: 386 PYAGALHHRKSTASTRG 402
P A K +S+ G
Sbjct: 214 PGASRSSASKEPSSSWG 230
>SB_23593| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-15)
Length = 153
Score = 29.9 bits (64), Expect = 5.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 367 YSPKSTPNLASNYNRPQPPPYAGALHH 393
Y PK+T AS+Y P PY G+L H
Sbjct: 11 YGPKTTEMTASSYFGPGFEPYLGSLRH 37
>SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.5 bits (63), Expect = 6.7
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 323 AVSQKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASN 378
AVS S+R+ + +S + +NSS S +S ++S + S S S+ + +S+
Sbjct: 43 AVSSSSSRSSSNSNNSSNSSSSSSSSSNSSSSSSSSSSSSSSSSSSSNSSSSSSSS 98
>SB_28689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 369
Score = 29.5 bits (63), Expect = 6.7
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 336 RGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPP 386
R + S + + D NS LGAS ++++A + P S+ + + Q PP
Sbjct: 55 RKSAGSSRSNVFDENSDSKLGASCSDTLASNGRPSSSRHTQATSTTKQLPP 105
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 29.5 bits (63), Expect = 6.7
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 179 KPSDGEGLVVRLGSSH--PFSSELKRLREEVRPLSKLPSCPRDYKRTTVERLFRD 231
K S G ++ SS+ P S EL++LR+E+ L + + + TT+ L RD
Sbjct: 590 KESVGPKIIAEARSSNAAPGSGELEKLRKEIEKLKEEYALKTEEYNTTISELRRD 644
>SB_15995| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)
Length = 1108
Score = 29.5 bits (63), Expect = 6.7
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 442 DG-ADDYAPIDANGTGFLSDTTGYLSMKPDTDGI----DVPDLGKFGPASDSTP-KVHVS 495
DG AD PI G G +D T PDT + +VPD GK P D P +V V
Sbjct: 938 DGVADVQTPIPDKGKGLDTDETPDEGKGPDTGNVQVEGNVPDEGKV-PNEDKVPDEVKVP 996
Query: 496 QAAKMP 501
K+P
Sbjct: 997 DEDKVP 1002
>SB_11849| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)
Length = 359
Score = 29.5 bits (63), Expect = 6.7
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 442 DG-ADDYAPIDANGTGFLSDTTGYLSMKPDTDGI----DVPDLGKFGPASDSTP-KVHVS 495
DG AD PI G G +D T PDT + +VPD GK P D P +V V
Sbjct: 189 DGVADVQTPIPDKGKGLDTDETPDEGKGPDTGNVQVEGNVPDEGKV-PNEDKVPDEVKVP 247
Query: 496 QAAKMP 501
K+P
Sbjct: 248 DEDKVP 253
>SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27)
Length = 447
Score = 29.5 bits (63), Expect = 6.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 406 ELLHDPSRTVLEESLKLLNEANIINYEIKDPIVDIADGADDYA 448
E+L T++ S ++ N N EI D + D+ D D YA
Sbjct: 255 EILTAQDSTLISHSTEMRNAVLSQNQEISDRLADLRDAVDTYA 297
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 29.1 bits (62), Expect = 8.8
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 191 GSSHPFSSELKRLREEVRPLSKLPSCPRDYKRTTVERLFRDAGLTLDWCRFEL 243
G++ PF+SE K P P CP D R DAG T D+C +
Sbjct: 168 GTNVPFTSESK-------PTEPTPGCPLDSIAGCPNRKACDAGFTGDYCEINI 213
>SB_16527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 29.1 bits (62), Expect = 8.8
Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 11/140 (7%)
Query: 74 HSGFIFGTPPR------GTEGPLTL-EVIGLNRQDFETRRXXXXXXXXXXXXMASHEVEL 126
H + G PP+ GT+ L G NR+ R ++
Sbjct: 60 HGHLLQGAPPKAPICGIGTQSETLLCRPCGANREGQRMRGVERRARGWFALVLSDIAARG 119
Query: 127 KIDNLNVEDLLDAHRMNRLKDILRTKLWTESSQDLYATFLASAIDLGARLPLKPSDGEGL 186
+ N+ ED+ D + LK ++ K+WTE + + ++ G L P L
Sbjct: 120 LVQNILDEDIPDDVKHKLLKPLVPAKVWTEEVRREFDPLMSGRRQKGPE-SLHPEKYYSL 178
Query: 187 VVRLGSSH-PFSSELKRLRE 205
V GS+H F SE++ + E
Sbjct: 179 FV--GSAHLRFPSEIRDVGE 196
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 29.1 bits (62), Expect = 8.8
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 320 HYAAVSQKSARAELGRRGTDSSEQPQLADNNSSK--SLGASPNNSIARSYSPKSTPNLAS 377
H+ AV +S +A+L + T++++ ++ + +K SLG SP S +P S P+ +
Sbjct: 818 HHPAVHGESDKADL-KINTETTDDNKMTNRVKTKEESLGTSPRRSSIGGSTPTSKPSNNN 876
Query: 378 N 378
N
Sbjct: 877 N 877
>SB_51315| Best HMM Match : OmpA (HMM E-Value=2.5)
Length = 342
Score = 29.1 bits (62), Expect = 8.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 125 ELKIDNLNVEDLLDAHRMNRLKDILRTKLWTESSQDL 161
E ++ N+ ED+LD + LK ++ K+WTE L
Sbjct: 14 EKEVQNILDEDILDDVKHKLLKPLVPAKVWTEEVDPL 50
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 29.1 bits (62), Expect = 8.8
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 341 SEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTAST 400
SE PQ +S + P + +R P S+P S R P P R+S S
Sbjct: 1031 SESPQRVTKSSKERPRKRPRHQ-SRERRPSSSPPRRSRPQRTSPSPRRTPEDRRRSRGSR 1089
Query: 401 RGHTP 405
R +P
Sbjct: 1090 RSPSP 1094
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.132 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,770,735
Number of Sequences: 59808
Number of extensions: 656180
Number of successful extensions: 2095
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2036
Number of HSP's gapped (non-prelim): 71
length of query: 507
length of database: 16,821,457
effective HSP length: 85
effective length of query: 422
effective length of database: 11,737,777
effective search space: 4953341894
effective search space used: 4953341894
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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