GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000030-TA|BGIBMGA000030-PA|IPR008908|Sarcoglycan
alphaepsilon, IPR006644|Dystroglycan-type cadherin-like
         (507 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-3|CAJ14154.1|  277|Anopheles gambiae predicted protein ...    29   0.22 
AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    25   3.6  
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    25   4.8  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    25   6.3  
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    25   6.3  
AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless female-s...    25   6.3  
AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless male-spe...    24   8.3  

>CR954257-3|CAJ14154.1|  277|Anopheles gambiae predicted protein
           protein.
          Length = 277

 Score = 29.5 bits (63), Expect = 0.22
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 226 ERLFRDAGLTLDWCRFELLKTYYKPRSTVQLEYMS 260
           ERLFR+      W R    +T Y+ R T  LEY+S
Sbjct: 224 ERLFRNVPAAAGWQRQHAKQTEYQCRLTYVLEYVS 258


>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 364 ARSYSPKSTPNLAS-NYNRPQPPPYAGALHHRKSTASTR 401
           +R+ SPK  P + S N   P PPP       R S+  TR
Sbjct: 47  SRNGSPKFAPAVQSKNRMPPVPPPKHSQRRRRSSSPRTR 85


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 321 YAAVSQKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTP 373
           YA+    +    +     +S+  PQ     S  S GA+  N+     SPK +P
Sbjct: 128 YASEGPSTGTNVINNNNNNSTTSPQDLSTASGGSSGANDGNNGRPEISPKLSP 180


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 321 YAAVSQKSARAELGRRGTDSSEQ-PQLADNNSSKSLGASPNNS 362
           Y+A +    R+E  R   D  +  P  + NNS+ +  +S NN+
Sbjct: 169 YSADTDSKLRSERIRDSRDERDSLPNASSNNSNNNNNSSSNNN 211


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 321 YAAVSQKSARAELGRRGTDSSEQ-PQLADNNSSKSLGASPNNS 362
           Y+A +    R+E  R   D  +  P  + NNS+ +  +S NN+
Sbjct: 169 YSADTDSKLRSERIRDSRDERDSLPNASSNNSNNNNNSSSNNN 211


>AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless
           female-specific zinc-fingerC isoform protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 321 YAAVSQKSARAELGRRGTDSSEQ-PQLADNNSSKSLGASPNNS 362
           Y+A +    R+E  R   D  +  P  + NNS+ +  +S NN+
Sbjct: 121 YSADTDSKLRSERIRDSRDERDSLPNASSNNSNNNNNSSSNNN 163


>AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless
           male-specific zinc-fingerC isoform protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 8.3
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 321 YAAVSQKSARAELGRRGTDSSEQ-PQLADNNSSKSLGASPNNS 362
           Y+A +    R+E  R   D  +  P  + NNS+ +  +S NN+
Sbjct: 169 YSADTDSKLRSERIRDSRDERDSLPNASSNNSNNNNNSSGNNN 211


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 481,783
Number of Sequences: 2123
Number of extensions: 19527
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 114
Number of HSP's gapped (non-prelim): 7
length of query: 507
length of database: 516,269
effective HSP length: 67
effective length of query: 440
effective length of database: 374,028
effective search space: 164572320
effective search space used: 164572320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)