Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000030-TA|BGIBMGA000030-PA|IPR008908|Sarcoglycan
alphaepsilon, IPR006644|Dystroglycan-type cadherin-like
(507 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF077544-3|AAK39242.3| 458|Caenorhabditis elegans Hypothetical ... 40 0.005
Z50176-4|CAA90541.1| 546|Caenorhabditis elegans Hypothetical pr... 33 0.36
Z79695-3|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr... 33 0.63
AC084152-4|AAR85899.1| 753|Caenorhabditis elegans Hypothetical ... 33 0.63
AC084152-3|AAK39314.2| 772|Caenorhabditis elegans Hypothetical ... 33 0.63
U56860-5|AAP40524.1| 685|Caenorhabditis elegans Intermediate fi... 31 2.5
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 31 2.5
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 31 2.5
U89245-1|AAB49459.1| 612|Caenorhabditis elegans transcription f... 30 3.3
AF003141-10|AAK21487.1| 612|Caenorhabditis elegans Uncoordinate... 30 3.3
AF001272-1|AAB84235.1| 612|Caenorhabditis elegans enhancer of s... 30 3.3
AF001271-1|AAB84234.1| 612|Caenorhabditis elegans enhancer of s... 30 3.3
Z99171-4|CAB16313.1| 722|Caenorhabditis elegans Hypothetical pr... 29 5.9
AL032639-4|CAA21636.2| 858|Caenorhabditis elegans Hypothetical ... 29 5.9
AL117195-14|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 29 7.7
>AF077544-3|AAK39242.3| 458|Caenorhabditis elegans Hypothetical
protein H22K11.4a protein.
Length = 458
Score = 39.5 bits (88), Expect = 0.005
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 50 RFHASLLGKPELPQWLHYIYSGRHHSGFIFGTPPRGTEGPLTLEVIG--LNRQDFETRRX 107
++ A+L KP LP WL + S ++ GTP + +TL VI L+ D + R
Sbjct: 54 KWEATLNKKPALPNWLRLLPSRHPEIAYLIGTPVTNVQ-HVTLHVIAKRLDNFDIQQRMV 112
Query: 108 XXXXXXXXXXXMASHEV-ELKIDNLNVEDLLD--AHRMNRLKDILR 150
+ +V EL I+ L+VEDL+ ++++L++ LR
Sbjct: 113 VINLVEDSLYQGNTQQVFELPINGLDVEDLVSNRDRKISQLENSLR 158
>Z50176-4|CAA90541.1| 546|Caenorhabditis elegans Hypothetical
protein C09G1.4 protein.
Length = 546
Score = 33.5 bits (73), Expect = 0.36
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 341 SEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASN-YNRPQPPPYAGALHHRKS 396
S P +A ++ + +L +PN + S +P+ P A + P+PPPY A+ +S
Sbjct: 204 SRTPPVACSSRTGTLQRTPNRRLPISSTPQPQPTYADQMQSLPEPPPYTIAMQRLRS 260
>Z79695-3|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical
protein F27D4.6 protein.
Length = 1008
Score = 32.7 bits (71), Expect = 0.63
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 369 PKSTPNLASNYNRPQPPPYAGALHHRKSTASTRGHTPELLHDPSRTVLEESLKLLNEANI 428
P T N+ S N+P P P+ + AS + ++ D R++ + LK L E N
Sbjct: 346 PTKTSNVTSQLNKPSPSPHTQRVPLLSPLASATRSSQKMFIDTLRSI-DVKLKKLEEENS 404
Query: 429 INYEIKDPIVD 439
+ IK IVD
Sbjct: 405 V---IKGMIVD 412
>AC084152-4|AAR85899.1| 753|Caenorhabditis elegans Hypothetical
protein Y102A11A.2b protein.
Length = 753
Score = 32.7 bits (71), Expect = 0.63
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 323 AVSQKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARS-YSPKS-TPNLASNYN 380
A +QK+ G S +Q + N S A PN ++R+ YSP S P +Y+
Sbjct: 177 ARNQKNETVHPSTDGIRSFQQSPTSSYNDS----AQPNYELSRTTYSPASHRPTPTKDYS 232
Query: 381 RPQPPPYAGALHHRKS----TASTRGHTPELLHDPS 412
+ PY A H+ S + S + +L H+PS
Sbjct: 233 DHREKPYNTATSHQSSERLNSESRSSRSSQLTHNPS 268
>AC084152-3|AAK39314.2| 772|Caenorhabditis elegans Hypothetical
protein Y102A11A.2a protein.
Length = 772
Score = 32.7 bits (71), Expect = 0.63
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 323 AVSQKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARS-YSPKS-TPNLASNYN 380
A +QK+ G S +Q + N S A PN ++R+ YSP S P +Y+
Sbjct: 177 ARNQKNETVHPSTDGIRSFQQSPTSSYNDS----AQPNYELSRTTYSPASHRPTPTKDYS 232
Query: 381 RPQPPPYAGALHHRKS----TASTRGHTPELLHDPS 412
+ PY A H+ S + S + +L H+PS
Sbjct: 233 DHREKPYNTATSHQSSERLNSESRSSRSSQLTHNPS 268
>U56860-5|AAP40524.1| 685|Caenorhabditis elegans Intermediate
filament, c protein2, isoform c protein.
Length = 685
Score = 30.7 bits (66), Expect = 2.5
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 353 KSLGASPNNSIARSYSPKSTP----NLASNYNRPQPPPYAGALHHRKSTASTRGHTPELL 408
+S +P + R+ SP ++P + S P P P + T T HT +
Sbjct: 436 QSSDQTPQKIVPRAQSPVTSPVFKETILSPPPIPTPSPTSDIAEEVLRTDETTQHTAITM 495
Query: 409 HD-PSRTVLEESLKLLNEANIINYEIKDPIVDIADGAD 445
H ++ V +E+ + +N N E+K+ +V+IA +
Sbjct: 496 HSIVTKEVKQEAKEKINSVTD-NAEMKEKVVEIAKNVE 532
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 30.7 bits (66), Expect = 2.5
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 353 KSLGASPNNSIARSYSPKSTP----NLASNYNRPQPPPYAGALHHRKSTASTRGHTPELL 408
+S +P + R+ SP ++P + S P P P + T T HT +
Sbjct: 436 QSSDQTPQKIVPRAQSPVTSPVFKETILSPPPIPTPSPTSDIAEEVLRTDETTQHTAITM 495
Query: 409 HD-PSRTVLEESLKLLNEANIINYEIKDPIVDIADGAD 445
H ++ V +E+ + +N N E+K+ +V+IA +
Sbjct: 496 HSIVTKEVKQEAKEKINSVTD-NAEMKEKVVEIAKNVE 532
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 30.7 bits (66), Expect = 2.5
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 353 KSLGASPNNSIARSYSPKSTP----NLASNYNRPQPPPYAGALHHRKSTASTRGHTPELL 408
+S +P + R+ SP ++P + S P P P + T T HT +
Sbjct: 436 QSSDQTPQKIVPRAQSPVTSPVFKETILSPPPIPTPSPTSDIAEEVLRTDETTQHTAITM 495
Query: 409 HD-PSRTVLEESLKLLNEANIINYEIKDPIVDIADGAD 445
H ++ V +E+ + +N N E+K+ +V+IA +
Sbjct: 496 HSIVTKEVKQEAKEKINSVTD-NAEMKEKVVEIAKNVE 532
>U89245-1|AAB49459.1| 612|Caenorhabditis elegans transcription
factor UNC-37 protein.
Length = 612
Score = 30.3 bits (65), Expect = 3.3
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 340 SSEQPQLADNNSSKSL-GASPNNSIARSYSPKSTPNLASNYN-RPQPPPYAGALHHRKST 397
+ + P A N + + G NS+A S + STP++ASN R Q P AG L +
Sbjct: 183 NDDHPSTASNGGAANKNGRDSTNSVASSGA--STPSIASNSRARQQQQPLAG-LQGLEQM 239
Query: 398 ASTRGHTPELLHDPS 412
G P LL S
Sbjct: 240 NFLAGFNPNLLRQAS 254
>AF003141-10|AAK21487.1| 612|Caenorhabditis elegans Uncoordinated
protein 37 protein.
Length = 612
Score = 30.3 bits (65), Expect = 3.3
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 340 SSEQPQLADNNSSKSL-GASPNNSIARSYSPKSTPNLASNYN-RPQPPPYAGALHHRKST 397
+ + P A N + + G NS+A S + STP++ASN R Q P AG L +
Sbjct: 183 NDDHPSTASNGGAANKNGRDSTNSVASSGA--STPSIASNSRARQQQQPLAG-LQGLEQM 239
Query: 398 ASTRGHTPELLHDPS 412
G P LL S
Sbjct: 240 NFLAGFNPNLLRQAS 254
>AF001272-1|AAB84235.1| 612|Caenorhabditis elegans enhancer of
split groucho protein.
Length = 612
Score = 30.3 bits (65), Expect = 3.3
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 340 SSEQPQLADNNSSKSL-GASPNNSIARSYSPKSTPNLASNYN-RPQPPPYAGALHHRKST 397
+ + P A N + + G NS+A S + STP++ASN R Q P AG L +
Sbjct: 183 NDDHPSTASNGGAANKNGRDSTNSVASSGA--STPSIASNSRARQQQQPLAG-LQGLEQM 239
Query: 398 ASTRGHTPELLHDPS 412
G P LL S
Sbjct: 240 NFLAGFNPNLLRQAS 254
>AF001271-1|AAB84234.1| 612|Caenorhabditis elegans enhancer of
split groucho protein.
Length = 612
Score = 30.3 bits (65), Expect = 3.3
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 340 SSEQPQLADNNSSKSL-GASPNNSIARSYSPKSTPNLASNYN-RPQPPPYAGALHHRKST 397
+ + P A N + + G NS+A S + STP++ASN R Q P AG L +
Sbjct: 183 NDDHPSTASNGGAANKNGRDSTNSVASSGA--STPSIASNSRARQQQQPLAG-LQGLEQM 239
Query: 398 ASTRGHTPELLHDPS 412
G P LL S
Sbjct: 240 NFLAGFNPNLLRQAS 254
>Z99171-4|CAB16313.1| 722|Caenorhabditis elegans Hypothetical
protein F47G4.4 protein.
Length = 722
Score = 29.5 bits (63), Expect = 5.9
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
Query: 322 AAVSQKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSI--ARSYSPKSTPNLASNY 379
A V +SA +L + T + S + P + A+S S P+L+
Sbjct: 367 APVKHRSASQKLPGKSTKTLNPKPAGSTRSVTPVSTKPPRTFGTAKSVIVSSKPSLSGYN 426
Query: 380 NRPQPPPYAGALHHRKSTASTRGHTPELLHDPSRTVLEESLKLLNEANIINY 431
NR P P ++ ++T S G T LL + + S + E I Y
Sbjct: 427 NRANPSP---SMSDLRTTKSMAGSTTSLLSERAPKKRSTSSRRNQEPITITY 475
>AL032639-4|CAA21636.2| 858|Caenorhabditis elegans Hypothetical
protein Y38F1A.3 protein.
Length = 858
Score = 29.5 bits (63), Expect = 5.9
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 23 AVETEMFAIPISPNLFNWTYQEFDQQYRFHASLLGKPELPQWLHYIYSGRH 73
A T M+ +P P + + + +YR+ E +W H++ G H
Sbjct: 528 AASTHMWLLPYLPYVGEQEHGSIEFKYRYLPEFFKLTEFRRWSHFVNLGNH 578
>AL117195-14|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18 protein.
Length = 1456
Score = 29.1 bits (62), Expect = 7.7
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 322 AAVSQKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNR 381
A+ S S A + + AD + G PN I + K P+L S+ N
Sbjct: 59 ASASGASTPANQAASSSPAPSGAPAADKKLTGPAGVKPNE-IEAYFGEKKPPSLNSSTNT 117
Query: 382 PQPPPYAGALHHRKSTASTRG 402
Q P AG + AST G
Sbjct: 118 TQ-PQQAGQTTQKARAASTTG 137
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.132 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,571,886
Number of Sequences: 27539
Number of extensions: 487670
Number of successful extensions: 1545
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1539
Number of HSP's gapped (non-prelim): 17
length of query: 507
length of database: 12,573,161
effective HSP length: 84
effective length of query: 423
effective length of database: 10,259,885
effective search space: 4339931355
effective search space used: 4339931355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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