Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000030-TA|BGIBMGA000030-PA|IPR008908|Sarcoglycan
alphaepsilon, IPR006644|Dystroglycan-type cadherin-like
(507 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low... 32 1.0
At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low... 32 1.0
At5g53430.1 68418.m06640 PHD finger family protein / SET domain-... 31 2.4
At2g35530.1 68415.m04352 bZIP transcription factor family protei... 31 2.4
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 31 2.4
At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99... 30 3.1
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 30 4.2
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ... 30 4.2
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 30 4.2
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 30 4.2
At5g02850.1 68418.m00228 hydroxyproline-rich glycoprotein family... 29 5.5
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 29 5.5
At3g25500.1 68416.m03171 formin homology 2 domain-containing pro... 29 5.5
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro... 29 5.5
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 29 5.5
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 29 5.5
At3g63180.1 68416.m07097 expressed protein 29 9.6
At3g20910.1 68416.m02643 CCAAT-binding transcription factor (CBF... 29 9.6
At3g10650.1 68416.m01281 expressed protein 29 9.6
At2g39240.1 68415.m04819 RNA polymerase I specific transcription... 29 9.6
>At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low
similarity to DNA polymerase eta [Homo sapiens]
GI:11463971; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 672
Score = 31.9 bits (69), Expect = 1.0
Identities = 22/87 (25%), Positives = 33/87 (37%)
Query: 324 VSQKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQ 383
VS+K + TD S Q + +K +G NNS ++ S ++ NYN
Sbjct: 515 VSEKDVVSCPSNEATDVSTQSESNKGTQTKKIGRKMNNSKEKNRGMPSIVDIFKNYNATP 574
Query: 384 PPPYAGALHHRKSTASTRGHTPELLHD 410
P S+AS R H+
Sbjct: 575 PSKQETQEDSTVSSASKRAKLSSSSHN 601
>At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low
similarity to DNA polymerase eta [Homo sapiens]
GI:11463971; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 588
Score = 31.9 bits (69), Expect = 1.0
Identities = 22/87 (25%), Positives = 33/87 (37%)
Query: 324 VSQKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQ 383
VS+K + TD S Q + +K +G NNS ++ S ++ NYN
Sbjct: 431 VSEKDVVSCPSNEATDVSTQSESNKGTQTKKIGRKMNNSKEKNRGMPSIVDIFKNYNATP 490
Query: 384 PPPYAGALHHRKSTASTRGHTPELLHD 410
P S+AS R H+
Sbjct: 491 PSKQETQEDSTVSSASKRAKLSSSSHN 517
>At5g53430.1 68418.m06640 PHD finger family protein / SET
domain-containing protein (TX5) contains Pfam domain,
PF00628: PHD-finger and PF00856: SET domain; identical
to cDNA trithorax 5 (TX5) partial cds GI:16118406
Length = 1043
Score = 30.7 bits (66), Expect = 2.4
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 188 VRLGSSHPFSSELKRLREEVRPLSKLPSC-PRDYKRTTVERLFRDAGLT 235
VR G PF ++RL+E+ S+L C PRD++ E L D G T
Sbjct: 281 VRRGMIFPFVDYVERLQEQ----SELRGCNPRDFQMALEEALLADQGFT 325
>At2g35530.1 68415.m04352 bZIP transcription factor family protein
contains Pfam domain PF00170: bZIP transcription factor;
similar to G-Box binding protein 2 (GI:5381313)
[Catharanthus roseus].
Length = 409
Score = 30.7 bits (66), Expect = 2.4
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 340 SSEQPQLADNNSSKSLG-ASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTA 398
S+ P + +S+ S G A+P+ S ++YSP P+ + PQP PY + H
Sbjct: 22 STAPPSSQEPSSAVSAGMATPDWSGFQAYSPMPPPH-GYVASSPQPHPYMWGVQHMMPPY 80
Query: 399 STRGHTPELLHDP 411
T H ++ P
Sbjct: 81 GTPPHPYVAMYPP 93
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 30.7 bits (66), Expect = 2.4
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 340 SSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPP 386
SS P L+ + S S ++P +S+ SP S P L+ + + P PPP
Sbjct: 30 SSSSPSLSPSPPSSSPSSAPPSSL----SPSSPPPLSLSPSSPPPPP 72
Score = 30.3 bits (65), Expect = 3.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 340 SSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPP 386
SS L+ + S +SP+++ S SP S P L+ + + P PPP
Sbjct: 75 SSPLSSLSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPP 121
>At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 489
Score = 30.3 bits (65), Expect = 3.1
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 359 PNNSIARSYSPK-STPNLASNYNRPQPPPYAGALHHRKSTASTRGH 403
P S A SY P+ S AS N P PP YA A S AS+ GH
Sbjct: 54 PAPSPASSYGPQYSQEGYASQPNNPPPPTYAPA----PSPASSYGH 95
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 29.9 bits (64), Expect = 4.2
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 320 HYAAVSQKSARAELGRRGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNY 379
H A+S A + + S + P ++ S S +P++S A ++P +P A ++
Sbjct: 190 HTPALSPSHATSHSPATPSPSPKSPSPVSHSPSHSPAHTPSHSPA--HTPSHSPAHAPSH 247
Query: 380 NRPQPPPYAGALHHRKSTASTRGHTPELLHDPS 412
+ P ++ A S A + H+P PS
Sbjct: 248 SPAHAPSHSPAHAPSHSPAHSPSHSPATPKSPS 280
>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
protein (ETT) identical to ETTIN GB:AF007788 from
[Arabidopsis thaliana]
Length = 608
Score = 29.9 bits (64), Expect = 4.2
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 383 QPPPYAGALHHRKSTASTRGHTPELLHDPSRTVLEESLKLLNEANIINYEIKDPIVDIAD 442
Q P ++ A++ R +L + + + + LL E+ I ++++ I+D+
Sbjct: 83 QAPDFSAAIYGLPPHVFCRILDVKLHAETTTDEVYAQVSLLPESEDIERKVREGIIDVDG 142
Query: 443 GADDYAPIDANGTGFLSDTTGYLSMKPDTDGIDVPDLGKFGPASDSTPKVHVSQAAKMPK 502
G +DY + + T + T S G VP A D P + SQ P+
Sbjct: 143 GEEDYEVLKRSNTPHMFCKTLTASDTSTHGGFSVPRRA----AEDCFPPLDYSQ----PR 194
Query: 503 PSAAL 507
PS L
Sbjct: 195 PSQEL 199
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 29.9 bits (64), Expect = 4.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 339 DSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPP 385
+SS P D++S+ + +P S + P + PN + + P PP
Sbjct: 133 ESSSNPNPPDSSSNPNSNPNPPESSSNPNPPVTVPNPPESSSNPNPP 179
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.9 bits (64), Expect = 4.2
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 119 MASHEVELKI--DNLNVEDLLDAHRMNRLKDILRTKLWTESSQD 160
+AS+ E K+ + V+D L +H +R D++RT W E S D
Sbjct: 1030 IASNPEEQKMFGRHFGVDDRLISHISSRSVDVIRTNYWNELSND 1073
>At5g02850.1 68418.m00228 hydroxyproline-rich glycoprotein family
protein
Length = 426
Score = 29.5 bits (63), Expect = 5.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 351 SSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPP 386
+SK SPN +I S S P+ S+++ P PPP
Sbjct: 97 TSKLFDVSPNRAIWLSAFRGSLPSFLSSHSLPPPPP 132
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 29.5 bits (63), Expect = 5.5
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 370 KSTPNLASNYNRPQPPPYAGALHHRKS--TASTRGHTPEL 407
+S P + ++ PPP A HHR+ A+T GH +L
Sbjct: 24 RSPPPATTGHHHRSPPPAITACHHRRPPLPATTAGHHRQL 63
>At3g25500.1 68416.m03171 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 1051
Score = 29.5 bits (63), Expect = 5.5
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 344 PQLADNNSSKSLGASPNNSIARSY--SPK----STPNLASNYNRPQPPPYAGALHHRKST 397
P+L+ NS +SL +SP+ + S SP+ S L S P PPP L R+S
Sbjct: 485 PKLSSRNS-QSLSSSPDRDFSHSLDVSPRISNISPQILQSRVPPPPPPPPPLPLWGRRSQ 543
Query: 398 ASTRGHT---PELLHDPS 412
+T+ T P L PS
Sbjct: 544 VTTKADTISRPPSLTPPS 561
>At2g25050.1 68415.m02996 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 1111
Score = 29.5 bits (63), Expect = 5.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 359 PNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKSTAST 400
P +S+ + SP ST N + P PPP HR + +S+
Sbjct: 579 PISSLRSTPSPSSTSNSIATQGPPPPPPPPPLQSHRSALSSS 620
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 29.5 bits (63), Expect = 5.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 346 LADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPP 386
+AD +SS + G PN+ S +P S PN N + PPP
Sbjct: 1 MADESSSPATG-DPNSQKPESTTPISIPNPNPNPSLTPPPP 40
>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1939
Score = 29.5 bits (63), Expect = 5.5
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 336 RGTDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHR- 394
+G + S P++ D NSSK+ NS S K++ L S+ R P G +
Sbjct: 1816 KGREKSSNPEITDANSSKN-----ENSNEWKKSKKASSKLDSS-KRANPTDKIGQQDRQI 1869
Query: 395 -KSTASTRGHTPELLHDPSRTVLEESLKLLNEANIINYEIKDPIVDIADGA 444
K AS +G +++ + E +LN + I +++ K P ++ G+
Sbjct: 1870 NKGNASNQGGVEDMI-SKRKQQREAVAAILNSSLIPSHKPKPPKRPLSPGS 1919
>At3g63180.1 68416.m07097 expressed protein
Length = 978
Score = 28.7 bits (61), Expect = 9.6
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 362 SIARSYSPKSTPNLASN-YNRPQPPPYAGALHHRKSTASTRGHT-PELLHDPSRTVLEES 419
SIA S +P +T N +SN Y+ PP A +H+ S A T G + DP + + +
Sbjct: 721 SIASS-APPATLNFSSNGYHISTPPGVAHQKNHQSSEAKTGGGSCSSNAEDPKKNLQGKP 779
Query: 420 LKLLNEANII 429
++N ++
Sbjct: 780 QGMMNGHTLV 789
>At3g20910.1 68416.m02643 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 303
Score = 28.7 bits (61), Expect = 9.6
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 338 TDSSEQPQLADNNSSKSLGASPNNSIARSYSPKSTPNLASNYNRPQPPPYAGALHHRKST 397
++ S+ P DN +K + + A YS K+ +L ++ QPPP+ + H
Sbjct: 64 SNGSKSPSNRDNTVNKESQVTTSPQSAGDYSDKNQESL--HHGITQPPPHPQLVGHTVGW 121
Query: 398 AST 400
AS+
Sbjct: 122 ASS 124
>At3g10650.1 68416.m01281 expressed protein
Length = 1309
Score = 28.7 bits (61), Expect = 9.6
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 145 LKDILRTKLWTESSQDLYATFLASAIDLGARLPLKPSDGEGLVVRLGSSHPFSSELKRLR 204
L+ IL+ K +T S D T L S + + + + G+VVR HP S E R
Sbjct: 148 LEKILQGKTFTRSEVDRLTTLLRSKAADSSTMNEEQRNEVGMVVR----HPPSHERDRTH 203
Query: 205 EEVRPLSKLPSCPRDYKRTTVERLFRDAGL 234
+ ++ L S P RT E + A L
Sbjct: 204 PDNGSMNTLVSTPPGSLRTLDECIASPAQL 233
>At2g39240.1 68415.m04819 RNA polymerase I specific transcription
initiation factor RRN3 family protein contains Pfam
profile PF05327: RNA polymerase I specific transcription
initiation factor RRN3
Length = 545
Score = 28.7 bits (61), Expect = 9.6
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 119 MASHEVELKIDNLNVEDLLDAHRMNRLKDILRTKLWTESSQDLYA 163
+A E LKI + +V L D H + L+ IL T++W +YA
Sbjct: 66 VAQRETLLKILSHSVACLDDVHHNHLLQLILGTRIWDHKPNVIYA 110
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.132 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,163,298
Number of Sequences: 28952
Number of extensions: 471927
Number of successful extensions: 1532
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1508
Number of HSP's gapped (non-prelim): 42
length of query: 507
length of database: 12,070,560
effective HSP length: 84
effective length of query: 423
effective length of database: 9,638,592
effective search space: 4077124416
effective search space used: 4077124416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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