Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000029-TA|BGIBMGA000029-PA|IPR002415|High mobility
group-like nuclear protein, IPR004038|Ribosomal protein
L7Ae/L30e/S12e/Gadd45, IPR004037|Ribosomal protein L7AE
         (156 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    88   7e-19
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    63   2e-11
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    43   2e-05
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    26   2.3  
SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces...    25   4.0  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    24   9.1  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    24   9.1  

>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 87.8 bits (208), Expect = 7e-19
 Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 10/126 (7%)

Query: 36  IAKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMC 95
           IAKP+A              +S  K+ +R G+K V K +R GEKG+V  AGDISP++++ 
Sbjct: 28  IAKPLAPKKLNKKMMKTVKKASKQKHILR-GVKEVVKAVRKGEKGLVILAGDISPMDVIS 86

Query: 96  HLPAVCEEKDVQYCYTPSRKDIGAAMGTMR--GCIMVL-------VKEHEDYKDLYEEVK 146
           H+P +CE+ +V Y YT S++ +G A  T R   C+M++       + + E+YK+ YEE+ 
Sbjct: 87  HIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMSKVEEYKESYEEII 146

Query: 147 SEIKLL 152
            E+  L
Sbjct: 147 KEVPAL 152


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 62.9 bits (146), Expect = 2e-11
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 57  SNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKD 116
           ++H   +R G     K L  G    +  A D  PIEI+ HLP +CE+K+V Y + PS+  
Sbjct: 26  ASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAA 85

Query: 117 IGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKL 151
           +G A G  R  I   +  +E   DL  ++++ IKL
Sbjct: 86  LGRACGVSRPVISASITTNE-ASDLLPQIQA-IKL 118


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 42.7 bits (96), Expect = 2e-05
 Identities = 19/87 (21%), Positives = 42/87 (48%)

Query: 63  IRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMG 122
           ++ GL  V   +   +  +V  A D+ PIE++  LPA+C++  V Y    ++  +G  + 
Sbjct: 132 VKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIH 191

Query: 123 TMRGCIMVLVKEHEDYKDLYEEVKSEI 149
                ++ + +  E+ K+    + S +
Sbjct: 192 QKTAAVLAVTEVREEDKNELASIVSAV 218


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 89  SPIEIMCHLPAVCEEKDVQYCYTPSRKD---IGAAMGTMRGCIMVLVKE 134
           SPI++  HL    E   V Y +   RKD   I  +  T++G +M+ +K+
Sbjct: 7   SPIDVDLHLDNEEERTFVDYEFEQGRKDKAPIYESDETVKGTVMIRLKD 55


>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 113

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 112 PSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEE 144
           PS+KD+    GT+R  I+VLV + +D++ L +E
Sbjct: 47  PSQKDLFILNGTVRPGIIVLVND-QDWELLEKE 78


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 111 TPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLLG 153
           TPS   +   M + R C++      +DY DL+  V +EI   G
Sbjct: 361 TPSEA-VCECMDSTRSCVINDDVSSDDYSDLFSYVCNEISCDG 402


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 130 VLVKEHEDYKDLYEEVKSEIKLL 152
           +L  ++E++KD YE++K E K L
Sbjct: 182 MLQLQNENFKDDYEKIKEENKRL 204


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,002
Number of Sequences: 5004
Number of extensions: 22955
Number of successful extensions: 58
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 7
length of query: 156
length of database: 2,362,478
effective HSP length: 67
effective length of query: 89
effective length of database: 2,027,210
effective search space: 180421690
effective search space used: 180421690
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)