Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000029-TA|BGIBMGA000029-PA|IPR002415|High mobility
group-like nuclear protein, IPR004038|Ribosomal protein
L7Ae/L30e/S12e/Gadd45, IPR004037|Ribosomal protein L7AE
         (156 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          79   2e-15
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        56   2e-08
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        40   0.001
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_42946| Best HMM Match : Peptidase_M48 (HMM E-Value=0.082)           27   9.3  
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)              27   9.3  

>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 8/121 (6%)

Query: 2   GKVKQEPVEQEDQADVSIKAEPQSHDEKVEHCSIIAKPMAXXXXXXXXXXXXXXSSNHK- 60
           GK+ +   E +++++   K     +DE     SIIAKP+A               +N K 
Sbjct: 30  GKMAKSKDENKEESEEKNKETRPDYDELAAAVSIIAKPLASRKLTKKLYKTVKKVTNRKY 89

Query: 61  -------NYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPS 113
                    +R G+K V K LR GEKG V  AGD+SPI+++ H+P +CE+  + Y Y PS
Sbjct: 90  LNLASKAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPS 149

Query: 114 R 114
           +
Sbjct: 150 K 150


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 37  AKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCH 96
           A P+A              ++N+K  +R G     K L  G    +  A D  P+EI+ H
Sbjct: 69  AFPLADPQLTVTILDLIQQATNYKQ-LRKGANEATKCLNRGIAEFIVMAADTEPLEILLH 127

Query: 97  LPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCI--MVLVKEHEDYKDLYEEVKSEIKLL 152
           LP +CE+K+V Y +  S+  +G A G  R  I   V V E    K   + +++ I+ L
Sbjct: 128 LPLLCEDKNVPYVFVRSKAALGRATGVTRPVIACAVTVNEGSQLKPQIQTLQNAIEKL 185


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 18/88 (20%), Positives = 39/88 (44%)

Query: 63  IRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMG 122
           ++ G+  +   +   +  +V  A D+ PIEI+  LPA+C +  V YC    +  +G  + 
Sbjct: 45  VKYGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVH 104

Query: 123 TMRGCIMVLVKEHEDYKDLYEEVKSEIK 150
                 + +    ++ K+    +   +K
Sbjct: 105 KKNATALCITGVRQEDKNSLNNLIESVK 132


>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 18/88 (20%), Positives = 39/88 (44%)

Query: 63  IRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMG 122
           ++ G+  +   +   +  +V  A D+ PIEI+  LPA+C +  V YC    +  +G  + 
Sbjct: 136 VKYGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVH 195

Query: 123 TMRGCIMVLVKEHEDYKDLYEEVKSEIK 150
                 + +    ++ K+    +   +K
Sbjct: 196 KKNATALCITGVRQEDKNSLNNLIESVK 223


>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 9   VEQEDQADVSIKAEPQSHDEKVEHCSI 35
           V  ED  + S+ A+ Q+H +++ HC+I
Sbjct: 719 VLHEDPDEDSLDADGQTHPKRIYHCNI 745


>SB_42946| Best HMM Match : Peptidase_M48 (HMM E-Value=0.082)
          Length = 460

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 23/96 (23%), Positives = 38/96 (39%)

Query: 60  KNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGA 119
           + ++R G K +   L++G  GM F +  I+   I        +EK        +   +  
Sbjct: 189 QKFLRRGPKFLDAVLKVGICGMSFVSYSITMRAIRYQREYSADEKAATIDLGFALGGVDC 248

Query: 120 AMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLLGHP 155
            M  +    ++ V   ED K LY E    +K   HP
Sbjct: 249 MMKRLTLNTVLRVLYGEDGKRLYSEKGESLKNNSHP 284


>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
          Length = 2007

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 91   IEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHED 137
            I+++ HL  V  E ++QY   P  ++IG+ M ++ G +M + +  E+
Sbjct: 1027 IKVIKHL-GVVGECNIQYALNPDSQEIGSCMKSV-GEVMAIGRRFEE 1071


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,811,882
Number of Sequences: 59808
Number of extensions: 172219
Number of successful extensions: 429
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 7
length of query: 156
length of database: 16,821,457
effective HSP length: 76
effective length of query: 80
effective length of database: 12,276,049
effective search space: 982083920
effective search space used: 982083920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)