Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000029-TA|BGIBMGA000029-PA|IPR002415|High mobility
group-like nuclear protein, IPR004038|Ribosomal protein
L7Ae/L30e/S12e/Gadd45, IPR004037|Ribosomal protein L7AE
(156 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 77 4e-15
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 58 2e-09
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 58 2e-09
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 56 1e-08
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 53 8e-08
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 45 2e-05
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 45 3e-05
At5g22160.1 68418.m02580 hypothetical protein 28 2.5
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 77.4 bits (182), Expect = 4e-15
Identities = 46/128 (35%), Positives = 69/128 (53%), Gaps = 12/128 (9%)
Query: 36 IAKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMC 95
IAKP+A ++ K ++ G+K V K +R G+KG+ AG+ISPI+++
Sbjct: 25 IAKPLAGKKLQKRTFKLIQKAAG-KKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVIT 83
Query: 96 HLPAVCEEKDVQYCYTPSRKDIGAAMGTMRG--CIMVLVK---------EHEDYKDLYEE 144
HLP +CEE V Y Y PS++D+ A T R C++V++K E K YE+
Sbjct: 84 HLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQ 143
Query: 145 VKSEIKLL 152
V +IK L
Sbjct: 144 VSDDIKEL 151
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 58.4 bits (135), Expect = 2e-09
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 37 AKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCH 96
A P+A ++N+K ++ G K L G V A D P+EI+ H
Sbjct: 10 AYPLADSQLSITILDLVQQATNYKQ-LKKGANEATKTLNRGISEFVVMAADAEPLEILLH 68
Query: 97 LPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHE--DYKDLYEEVKSEIKLL 152
LP + E+K+V Y + PS++ +G A G R I V +E K + +K I+ L
Sbjct: 69 LPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLKDAIEKL 126
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 58.4 bits (135), Expect = 2e-09
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 37 AKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCH 96
A P+A ++N+K ++ G K L G V A D P+EI+ H
Sbjct: 10 AYPLADSQLSITIMDLVQQATNYKQ-LKKGANEATKTLNRGISEFVVMAADAEPLEILLH 68
Query: 97 LPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHE--DYKDLYEEVKSEIKLL 152
LP + E+K+V Y + PS++ +G A G R I V +E K + +K I+ L
Sbjct: 69 LPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLKDAIEKL 126
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 55.6 bits (128), Expect = 1e-08
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 30 VEHCSIIAKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDIS 89
VE + A P+A ++N+K ++ G K L G + A D
Sbjct: 3 VEGVNPKAYPLADSQLSITILDLVQQATNYKQ-LKKGANEATKTLNRGISEFIVMAADTE 61
Query: 90 PIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHE--DYKDLYEEVKS 147
P+EI+ HLP + E+K+V Y + PS++ +G A R I V +E K + +K
Sbjct: 62 PLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLKD 121
Query: 148 EIKLL 152
I+ L
Sbjct: 122 AIEKL 126
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 53.2 bits (122), Expect = 8e-08
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 72 KQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVL 131
K L G V A D P+EI+ HLP + E+K+V Y + PS++ +G A G R I
Sbjct: 76 KTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACS 135
Query: 132 VKEHE--DYKDLYEEVKSEIKLL 152
V +E K + +K I+ L
Sbjct: 136 VTSNEASQLKSQIQHLKDAIEKL 158
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 45.2 bits (102), Expect = 2e-05
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 63 IRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAM- 121
++ GL V + + +V A D+ PIE++ LPA+C + +V YC + +GA +
Sbjct: 127 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVH 186
Query: 122 GTMRGCIMVLVKEHED---YKDLYEEVKS 147
C+ + ++ED + + E +K+
Sbjct: 187 QKTASCLCLTTVKNEDKLEFSKILEAIKA 215
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 44.8 bits (101), Expect = 3e-05
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 63 IRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMG 122
++ GL V + + +V A D+ PIE++ LPA+C + +V YC + +GA +
Sbjct: 126 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVH 185
Query: 123 TMRGCIMVLVKEHEDYKDLYEEVKSEIK 150
+ L + K + ++ IK
Sbjct: 186 QKTAAALCLTTVKNEDKLEFSKILEAIK 213
>At5g22160.1 68418.m02580 hypothetical protein
Length = 353
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 82 VFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGC 127
V FA D L AVC + V++ P+ K +G+ +G MR C
Sbjct: 291 VLFAMDTDVSCFNGFLIAVCPDIAVKFTTDPAGKGMGSLLGHMRWC 336
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,451,103
Number of Sequences: 28952
Number of extensions: 125127
Number of successful extensions: 284
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 276
Number of HSP's gapped (non-prelim): 8
length of query: 156
length of database: 12,070,560
effective HSP length: 75
effective length of query: 81
effective length of database: 9,899,160
effective search space: 801831960
effective search space used: 801831960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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