Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000029-TA|BGIBMGA000029-PA|IPR002415|High mobility
group-like nuclear protein, IPR004038|Ribosomal protein
L7Ae/L30e/S12e/Gadd45, IPR004037|Ribosomal protein L7AE
(156 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 81 4e-16
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 81 5e-16
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 59 2e-09
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 58 3e-09
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 44 6e-05
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 43 1e-04
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 33 0.10
05_03_0115 - 8544590-8544958,8545408-8545503,8561954-8562505,857... 33 0.10
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 28 3.9
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 81.0 bits (191), Expect = 4e-16
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 36 IAKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMC 95
IAKP+A +S K ++ G+K V K +R G+KG+ AG+ISPI+++
Sbjct: 19 IAKPLAGKKLCKRTLKLVRRASEAK-CLKRGVKEVVKSIRRGQKGLCIIAGNISPIDVIT 77
Query: 96 HLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIK 150
H+P +CEE ++ Y Y PS++D+ A T R VLV +L E+VK ++K
Sbjct: 78 HVPILCEEANIPYVYVPSKEDLATAGTTKRPTCCVLVLTKPAKGELEEDVKEKLK 132
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 80.6 bits (190), Expect = 5e-16
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 36 IAKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMC 95
IAKP+A +S K ++ G+K V K +R G KG+ AG+ISPI+++
Sbjct: 19 IAKPLAGKKLCKRTLKLVRRASEAK-CLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVIT 77
Query: 96 HLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIK 150
H+P +CEE ++ Y Y PS++D+ A T R VLV ++ EEVK ++K
Sbjct: 78 HVPILCEEANIPYIYVPSKEDLATAGTTKRPTCCVLVMTKPAKGEINEEVKEKLK 132
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 58.8 bits (136), Expect = 2e-09
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 37 AKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCH 96
A P+A +SN+K ++ G K L G V A D P+EI+ H
Sbjct: 10 AYPLADAQLTMTILDLVQQASNYKQ-LKKGANEATKTLNRGISEFVVMAADTEPLEILLH 68
Query: 97 LPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHE 136
LP + E+K+V Y + PS++ +G A G R I V +E
Sbjct: 69 LPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNE 108
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 58.0 bits (134), Expect = 3e-09
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 37 AKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCH 96
A P+A ++N+K ++ G K L G V A D P+EI+ H
Sbjct: 8 AYPLADSQLAQAIQELVSQAANYKQ-LKKGANEATKTLNRGIAEFVVMAADAEPLEILLH 66
Query: 97 LPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHE--DYKDLYEEVKSEIKLL 152
LP + E+K+V Y + PS++ +G A G R I V +E + +D +K I+ L
Sbjct: 67 LPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASNLRDPINNLKVAIEKL 124
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 44.0 bits (99), Expect = 6e-05
Identities = 21/88 (23%), Positives = 42/88 (47%)
Query: 63 IRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMG 122
++ GL V + + +V A D+ PIE++ LPA+C + +V YC + +G+ +
Sbjct: 128 VKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVH 187
Query: 123 TMRGCIMVLVKEHEDYKDLYEEVKSEIK 150
++ L + K + ++ IK
Sbjct: 188 KKTASVLCLTTVKNEDKLEFSKILEAIK 215
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 63 IRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMG 122
++ GL V + + +V A D+ PIE++ LPA+C + ++ YC + +G+ +
Sbjct: 113 VKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVH 172
Query: 123 TMRGCIMVL--VKEHE--DYKDLYEEVKS 147
++ L VK + ++ + E +KS
Sbjct: 173 KKTASVLCLTTVKNEDKLEFSKILEAIKS 201
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 33.1 bits (72), Expect = 0.10
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 63 IRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPS 113
++ GL V + + +V A D+ PIE++ LPA+C + ++ + T S
Sbjct: 112 VKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIVHKKTAS 162
>05_03_0115 -
8544590-8544958,8545408-8545503,8561954-8562505,
8576247-8576312,8576623-8576694,8576967-8577082,
8577743-8577838,8578498-8578765
Length = 544
Score = 33.1 bits (72), Expect = 0.10
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 116 DIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLLGH 154
++G+A+G +R LVKE+ D K E++KS+I+ L H
Sbjct: 113 ELGSAVGRLRDKEEHLVKEYRDLKLEIEQIKSDIQSLRH 151
>05_05_0156 +
22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 99 AVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEH 135
A C+ VQ+CY P R+ + A M + +L K H
Sbjct: 446 ATCKRGFVQFCYEPIREIMNACMNSKHKLWPMLEKIH 482
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,084,631
Number of Sequences: 37544
Number of extensions: 145446
Number of successful extensions: 293
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 9
length of query: 156
length of database: 14,793,348
effective HSP length: 76
effective length of query: 80
effective length of database: 11,940,004
effective search space: 955200320
effective search space used: 955200320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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