Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000029-TA|BGIBMGA000029-PA|IPR002415|High mobility
group-like nuclear protein, IPR004038|Ribosomal protein
L7Ae/L30e/S12e/Gadd45, IPR004037|Ribosomal protein L7AE
(156 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023844-3|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 102 1e-22
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 59 2e-09
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 46 1e-05
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 46 1e-05
AF040655-12|AAB95039.1| 507|Caenorhabditis elegans Hypothetical... 29 2.0
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 27 4.6
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 27 4.6
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 27 4.6
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 27 4.6
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 27 4.6
AF002196-3|AAP68957.1| 916|Caenorhabditis elegans Hypothetical ... 27 4.6
AF002196-2|AAP68956.1| 915|Caenorhabditis elegans Hypothetical ... 27 4.6
AF002196-1|AAP68955.1| 913|Caenorhabditis elegans Hypothetical ... 27 4.6
U97005-13|AAB52290.1| 868|Caenorhabditis elegans Hypothetical p... 27 6.0
U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical p... 27 6.0
AC006776-4|AAF60628.2| 354|Caenorhabditis elegans Hypothetical ... 27 6.0
>AL023844-3|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 102 bits (245), Expect = 1e-22
Identities = 48/131 (36%), Positives = 75/131 (57%)
Query: 22 EPQSHDEKVEHCSIIAKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGM 81
E + E + IA+P+A +S +R G+K VQK+LR EKG+
Sbjct: 28 EKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKASAGDKTLREGIKDVQKELRRNEKGI 87
Query: 82 VFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDL 141
AG++SPI++ H+P +CEEK++ Y Y PSR+ +G A+G R I++ VK D+K+L
Sbjct: 88 CILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPSILIFVKPSGDFKEL 147
Query: 142 YEEVKSEIKLL 152
Y+EV ++ L
Sbjct: 148 YDEVAEALRHL 158
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 58.8 bits (136), Expect = 2e-09
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 37 AKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCH 96
A P+A + N+K ++ G K L G ++ A D P+EI+ H
Sbjct: 10 AFPLADTNLSQKLMDLVQQAMNYKQ-LKKGANEATKTLNRGISEIIVMAADAEPLEILLH 68
Query: 97 LPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHE--DYKDLYEEVKSEIKLL 152
LP +CE+K+V Y + S+ +G A G R I + ++E K +++K +++ L
Sbjct: 69 LPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVEKL 126
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 46.0 bits (104), Expect = 1e-05
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 61 NYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAA 120
N +R+G+ + + + +V A D++P+EI+ HLPA+C + +V Y + +G
Sbjct: 135 NTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 194
Query: 121 MGTMRGCIMVLVKEHEDYK 139
+ + LV + + K
Sbjct: 195 VRRKTTAAVALVDVNPEDK 213
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 46.0 bits (104), Expect = 1e-05
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 61 NYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAA 120
N +R+G+ + + + +V A D++P+EI+ HLPA+C + +V Y + +G
Sbjct: 115 NTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 174
Query: 121 MGTMRGCIMVLVKEHEDYK 139
+ + LV + + K
Sbjct: 175 VRRKTTAAVALVDVNPEDK 193
>AF040655-12|AAB95039.1| 507|Caenorhabditis elegans Hypothetical
protein T24E12.1 protein.
Length = 507
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 66 GLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRK 115
G K+ +Q R E G++ F G I ++I CHL + + + + PS K
Sbjct: 218 GKKVRAEQNRQAENGLIHFKGLIGKMKI-CHLVRLKKRRYENASHPPSSK 266
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 107 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 152
+Y Y R +G G + +L+K+H+D D + IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 107 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 152
+Y Y R +G G + +L+K+H+D D + IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 107 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 152
+Y Y R +G G + +L+K+H+D D + IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 107 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 152
+Y Y R +G G + +L+K+H+D D + IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 107 QYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLL 152
+Y Y R +G G + +L+K+H+D D + IK+L
Sbjct: 748 RYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVHDELQNFDQHIKVL 793
>AF002196-3|AAP68957.1| 916|Caenorhabditis elegans Hypothetical
protein C09D4.4c protein.
Length = 916
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 129 MVLVKEHEDYKDLYEEVKSEIKLLGHP 155
M +VK HE +K E++++E + L HP
Sbjct: 394 MPVVKAHEKHKSFREKLRNETRKLIHP 420
>AF002196-2|AAP68956.1| 915|Caenorhabditis elegans Hypothetical
protein C09D4.4b protein.
Length = 915
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 129 MVLVKEHEDYKDLYEEVKSEIKLLGHP 155
M +VK HE +K E++++E + L HP
Sbjct: 391 MPVVKAHEKHKSFREKLRNETRKLIHP 417
>AF002196-1|AAP68955.1| 913|Caenorhabditis elegans Hypothetical
protein C09D4.4a protein.
Length = 913
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 129 MVLVKEHEDYKDLYEEVKSEIKLLGHP 155
M +VK HE +K E++++E + L HP
Sbjct: 391 MPVVKAHEKHKSFREKLRNETRKLIHP 417
>U97005-13|AAB52290.1| 868|Caenorhabditis elegans Hypothetical
protein F19F10.11b protein.
Length = 868
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 4 VKQEPVEQEDQADVSIKAEPQSHDEK 29
VKQEP+E E+ + +K E DE+
Sbjct: 803 VKQEPIETEEFEKIYVKREAVEEDEE 828
>U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical
protein F19F10.11a protein.
Length = 1121
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 4 VKQEPVEQEDQADVSIKAEPQSHDEK 29
VKQEP+E E+ + +K E DE+
Sbjct: 803 VKQEPIETEEFEKIYVKREAVEEDEE 828
>AC006776-4|AAF60628.2| 354|Caenorhabditis elegans Hypothetical
protein Y46H3C.6 protein.
Length = 354
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 3 KVKQEPVEQEDQADVSIKAEPQSHDEKVE 31
+VK+EP ++++ D AE + DE+VE
Sbjct: 76 EVKEEPEDEKEPEDEEEPAEDEEDDEEVE 104
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,645,046
Number of Sequences: 27539
Number of extensions: 132486
Number of successful extensions: 355
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 19
length of query: 156
length of database: 12,573,161
effective HSP length: 76
effective length of query: 80
effective length of database: 10,480,197
effective search space: 838415760
effective search space used: 838415760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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