GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000029-TA|BGIBMGA000029-PA|IPR002415|High mobility
group-like nuclear protein, IPR004038|Ribosomal protein
L7Ae/L30e/S12e/Gadd45, IPR004037|Ribosomal protein L7AE
         (156 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   0.81 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   2.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 62  YIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCE 102
           ++R G K +  +LRL    + F  G   P E +C LP  CE
Sbjct: 555 WVRVG-KYLSGELRLNMSAIQFKLGHPEPPESVCSLP--CE 592


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 122 GTMRGCIMVLVKEHEDYKDLYEEVKSE 148
           GT +  I+V        KD+YE+ K+E
Sbjct: 44  GTTKDLILVKKSTAHFVKDIYEKYKNE 70


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,739
Number of Sequences: 429
Number of extensions: 1574
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 156
length of database: 140,377
effective HSP length: 53
effective length of query: 103
effective length of database: 117,640
effective search space: 12116920
effective search space used: 12116920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)