GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000029-TA|BGIBMGA000029-PA|IPR002415|High mobility
group-like nuclear protein, IPR004038|Ribosomal protein
L7Ae/L30e/S12e/Gadd45, IPR004037|Ribosomal protein L7AE
         (156 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45...    77   4e-15
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45...    58   2e-09
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45...    58   2e-09
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45...    56   1e-08
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45...    53   8e-08
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            45   2e-05
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    45   3e-05
At5g22160.1 68418.m02580 hypothetical protein                          28   2.5  

>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 156

 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 46/128 (35%), Positives = 69/128 (53%), Gaps = 12/128 (9%)

Query: 36  IAKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMC 95
           IAKP+A              ++  K  ++ G+K V K +R G+KG+   AG+ISPI+++ 
Sbjct: 25  IAKPLAGKKLQKRTFKLIQKAAG-KKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVIT 83

Query: 96  HLPAVCEEKDVQYCYTPSRKDIGAAMGTMRG--CIMVLVK---------EHEDYKDLYEE 144
           HLP +CEE  V Y Y PS++D+  A  T R   C++V++K         E    K  YE+
Sbjct: 84  HLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQ 143

Query: 145 VKSEIKLL 152
           V  +IK L
Sbjct: 144 VSDDIKEL 151


>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 37  AKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCH 96
           A P+A              ++N+K  ++ G     K L  G    V  A D  P+EI+ H
Sbjct: 10  AYPLADSQLSITILDLVQQATNYKQ-LKKGANEATKTLNRGISEFVVMAADAEPLEILLH 68

Query: 97  LPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHE--DYKDLYEEVKSEIKLL 152
           LP + E+K+V Y + PS++ +G A G  R  I   V  +E    K   + +K  I+ L
Sbjct: 69  LPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLKDAIEKL 126


>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 37  AKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCH 96
           A P+A              ++N+K  ++ G     K L  G    V  A D  P+EI+ H
Sbjct: 10  AYPLADSQLSITIMDLVQQATNYKQ-LKKGANEATKTLNRGISEFVVMAADAEPLEILLH 68

Query: 97  LPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHE--DYKDLYEEVKSEIKLL 152
           LP + E+K+V Y + PS++ +G A G  R  I   V  +E    K   + +K  I+ L
Sbjct: 69  LPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLKDAIEKL 126


>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 3/125 (2%)

Query: 30  VEHCSIIAKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDIS 89
           VE  +  A P+A              ++N+K  ++ G     K L  G    +  A D  
Sbjct: 3   VEGVNPKAYPLADSQLSITILDLVQQATNYKQ-LKKGANEATKTLNRGISEFIVMAADTE 61

Query: 90  PIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHE--DYKDLYEEVKS 147
           P+EI+ HLP + E+K+V Y + PS++ +G A    R  I   V  +E    K   + +K 
Sbjct: 62  PLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLKD 121

Query: 148 EIKLL 152
            I+ L
Sbjct: 122 AIEKL 126


>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 160

 Score = 53.2 bits (122), Expect = 8e-08
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 72  KQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVL 131
           K L  G    V  A D  P+EI+ HLP + E+K+V Y + PS++ +G A G  R  I   
Sbjct: 76  KTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACS 135

Query: 132 VKEHE--DYKDLYEEVKSEIKLL 152
           V  +E    K   + +K  I+ L
Sbjct: 136 VTSNEASQLKSQIQHLKDAIEKL 158


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 63  IRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAM- 121
           ++ GL  V   +   +  +V  A D+ PIE++  LPA+C + +V YC    +  +GA + 
Sbjct: 127 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVH 186

Query: 122 GTMRGCIMVLVKEHED---YKDLYEEVKS 147
                C+ +   ++ED   +  + E +K+
Sbjct: 187 QKTASCLCLTTVKNEDKLEFSKILEAIKA 215


>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 22/88 (25%), Positives = 41/88 (46%)

Query: 63  IRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMG 122
           ++ GL  V   +   +  +V  A D+ PIE++  LPA+C + +V YC    +  +GA + 
Sbjct: 126 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVH 185

Query: 123 TMRGCIMVLVKEHEDYKDLYEEVKSEIK 150
                 + L     + K  + ++   IK
Sbjct: 186 QKTAAALCLTTVKNEDKLEFSKILEAIK 213


>At5g22160.1 68418.m02580 hypothetical protein
          Length = 353

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 82  VFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGC 127
           V FA D         L AVC +  V++   P+ K +G+ +G MR C
Sbjct: 291 VLFAMDTDVSCFNGFLIAVCPDIAVKFTTDPAGKGMGSLLGHMRWC 336


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,451,103
Number of Sequences: 28952
Number of extensions: 125127
Number of successful extensions: 284
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 276
Number of HSP's gapped (non-prelim): 8
length of query: 156
length of database: 12,070,560
effective HSP length: 75
effective length of query: 81
effective length of database: 9,899,160
effective search space: 801831960
effective search space used: 801831960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)