Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000028-TA|BGIBMGA000028-PA|undefined
(475 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 33 0.12
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 29 1.1
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.3
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 27 4.3
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 27 4.3
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa... 27 7.6
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 27 7.6
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 27 7.6
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 27 7.6
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 10.0
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 32.7 bits (71), Expect = 0.12
Identities = 34/194 (17%), Positives = 84/194 (43%), Gaps = 15/194 (7%)
Query: 191 LEKAHLYWDIFI--NSEVGKLVWEKTGMKKMFKAFTGPDGKISFETMFKNFENTSFRRHW 248
+ KA LY + I ++ + + K +F + P ++FE +F + +
Sbjct: 234 IPKASLYDTVLILCSTYISTYSYSKLAQSVIFNLISSPVSNLAFENVFNILQYNRSNVNA 293
Query: 249 IKASAKYLTDMAVHVTKPENCVLHRYISMAEYVINSFMESQGFPNSIQFNAKAPAKSLTA 308
++ + + + + + K + ++A ++S +E FP + FN + L
Sbjct: 294 VRGAVRLMRFLMLQEVKND--------AIASITLSSSIEFTEFP--LGFNENVDFEILGT 343
Query: 309 IINYLLKTYMDFDADVTEY--VVPAVEYAKQTLKL-AEKAAQSVATREDYAAVSDRLTDA 365
+ +L + + ++ ++ + Y Q L L A + ++ + +A + DR+ D
Sbjct: 344 VYLFLRTPSILNRLNFLDWHRILNILMYCSQYLPLKASTSKEAFSKTAAFANIYDRVLDF 403
Query: 366 LNLEVIEPVLRVYR 379
L+ E + P+L+ ++
Sbjct: 404 LDFEALIPLLQQFQ 417
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/84 (19%), Positives = 31/84 (36%)
Query: 283 NSFMESQGFPNSIQFNAKAPAKSLTAIINYLLKTYMDFDADVTEYVVPAVEYAKQTLKLA 342
+S + + P+S +A ++ + T++D D E V+P Y TL
Sbjct: 131 SSILSNSTIPSSSSISASTITTTIISGSTQFTTTFVDQSIDTVEVVIPTAGYITTTLTSG 190
Query: 343 EKAAQSVATREDYAAVSDRLTDAL 366
S T + + L + +
Sbjct: 191 SSYPVSTTTLQTVSGTQSGLVEVI 214
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 139 DNLMNLASSFTQNKEGGSYMPLIMSALKGFTKMEADKKADEHKDHASFLPP 189
D + ++SS + + + G+ P S+L ++ AD H H+S PP
Sbjct: 164 DPVATISSSSSSHLDMGAIHPPHHSSLPPHMGVDPSTMADAHNAHSSLTPP 214
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 436 WDLYNAIQSDVNCEAAYPADCSAFHE---HELRVTTEPY 471
W + + S++NC DC H H L ++T +
Sbjct: 274 WSIQRSNDSNINCSTCLDVDCQHLHSLDTHSLDISTHTF 312
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 58 IGNLMQGDNVKNLASLFNNEKEEKEKDSGNIGDILSGLGSLMG-GQDGKIDPAMIGGMI 115
+ +L+QG N+K + K E+ + + N I+ G L+ DG ID + +G ++
Sbjct: 256 LNSLIQGTNLKAVVVYGGAPKSEQARAAKNASVIIGTPGRLLDLINDGSIDCSQVGYLV 314
>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 359
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 301 APAKSLTAIINYLLKT-YMDFDADVTEYVVPAVEYAKQT 338
APA ++ A ++ + ++ DAD EYV+ + E+ KQ+
Sbjct: 48 APAIAIVAALSVAVGLKHLSEDADAKEYVINSFEHLKQS 86
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 26.6 bits (56), Expect = 7.6
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 281 VINSFMESQGFPNSIQFNAKAPAKSLTAIINYLLKTYMDFDADVTEYVVPAVEYAKQTLK 340
++ E+ G P + F +PA + + ++ + F +D+TE+ A YA+
Sbjct: 242 LVKELRENIGIPAAASFKHVSPAGAAVGLPLSDVEKKVYFVSDITEFTPLACAYAR---- 297
Query: 341 LAEKAAQSVATREDYAAVSD 360
+ A +++ D+ A+SD
Sbjct: 298 --ARGADRMSSFGDFIALSD 315
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 309 IINYLLKTYMDFDADVTEYVVPAVEY 334
II+YLLK D DA++ E AV Y
Sbjct: 296 IIDYLLKNRRDIDAELYEPFQTAVRY 321
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 243 SFRRHWIKASAKYLTDMAVHVTKPENCVLHRYIS 276
SFR W+ KY + +H+ PE + Y+S
Sbjct: 260 SFRNGWLVLYDKYRHEQPLHIVVPEKNLKSLYLS 293
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 10.0
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 85 SGNIGDILSGLGSLMGGQD-GKIDPAMIGGMISMFASMGSTPKR 127
S N GDI LMGG G GM++ F +M P+R
Sbjct: 478 SMNFGDISKMANMLMGGGGPGGAGGMDFSGMLNQFQNMQKPPRR 521
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.133 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,631
Number of Sequences: 5004
Number of extensions: 82220
Number of successful extensions: 198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 11
length of query: 475
length of database: 2,362,478
effective HSP length: 75
effective length of query: 400
effective length of database: 1,987,178
effective search space: 794871200
effective search space used: 794871200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
- SilkBase 1999-2023 -