Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000028-TA|BGIBMGA000028-PA|undefined
         (475 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3368| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.054
SB_22527| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.0  
SB_38134| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.99)           30   3.5  
SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47)                  29   6.2  
SB_44458| Best HMM Match : Filament (HMM E-Value=1)                    29   6.2  

>SB_3368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 36.3 bits (80), Expect = 0.054
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 6/66 (9%)

Query: 217 KKMFKAFTGPDGKIS-----FETMFKNFENTSFRRHWIKASAKYLTDMAVHVTKPENCVL 271
           K+M K    PD K+S      E  F   EN  F+R +I  S KYL D+++ V  P++ + 
Sbjct: 161 KRMSKLAEKPD-KVSPLYAPVEQDFNGDENRGFKRKFIGRSRKYLADLSLLVGLPQDALC 219

Query: 272 HRYISM 277
           H ++++
Sbjct: 220 HYFLAI 225


>SB_22527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 266 PENCVLHRYISMAEYVINSFMESQGFPNSIQFNAKAPAKSLTAIINYLLKTYMDFDADVT 325
           P+  +L RY+++ E+    ++ SQ F  S+    +AP  + + + NY +K   D D +VT
Sbjct: 252 PDQELLIRYMTLGEF---RYLPSQSF--SVNVTWEAPVFNYSTLDNYTVKYKKDSDGEVT 306


>SB_38134| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.99)
          Length = 612

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 81  KEKDSGNIGDILSGLGSLMGGQDGKIDPAMIGGMISMFASMGSTPKREKREQKKEITF 138
           K+ D  NI +ILS LG   G  D     +  G M  M      T K  K+E  K  +F
Sbjct: 281 KDDDDSNIQNILSNLGISQGSDDDVNKKSSKGKMAEM---KNETQKNSKKEDPKIASF 335


>SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47)
          Length = 1250

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 275 ISMAEYVINSFMESQGFPNSIQFNAKAPAKSLTAIINYLLKTYMDF---DADVTEYVVPA 331
           +SMA+Y I++   ++  P+ +  N KA   SL ++ NY++    +F   D  +   +   
Sbjct: 468 VSMAQYDIDNQRIAR--PSEVLSNVKAMMSSLRSLENYIVTAVRNFRYLDVFLRRVMTDG 525

Query: 332 VEYAKQTLKLAEKAAQSVATREDYAAVSDR 361
           + Y+ + +    +        E+Y  V++R
Sbjct: 526 IVYSPRRMAFVNRPGMPFRA-EEYTDVNER 554


>SB_44458| Best HMM Match : Filament (HMM E-Value=1)
          Length = 748

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)

Query: 326 EYVVPAVEYAKQTLKLAEKAAQSVATREDYA 356
           +YV+P++E  ++  K A+  + + +TR DYA
Sbjct: 369 DYVIPSIEDVEERSKFAQFPSPAKSTRSDYA 399


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,875,137
Number of Sequences: 59808
Number of extensions: 578558
Number of successful extensions: 1575
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1573
Number of HSP's gapped (non-prelim): 6
length of query: 475
length of database: 16,821,457
effective HSP length: 85
effective length of query: 390
effective length of database: 11,737,777
effective search space: 4577733030
effective search space used: 4577733030
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)