GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000028-TA|BGIBMGA000028-PA|undefined
         (475 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    28   0.16 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   2.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   4.7  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   8.2  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 27.9 bits (59), Expect = 0.16
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 111  IGGMISMFASMGSTPKREKREQKKEITFDNLMNL 144
            IGG+++ F++  + PKRE   +KK + F  L +L
Sbjct: 1276 IGGIVTYFST--NLPKRETEVRKKSLDFGKLCSL 1307


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 65  DNVKNLASLFNNEKEEKEKDSGNIGDILSG 94
           DN  N +S    E     K+SGN G +  G
Sbjct: 395 DNRNNTSSRAQGETSRNSKNSGNGGGVQDG 424


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 384 SAAAPHCQEHLMCLVNRPEGDRKGA--PGL 411
           SA  PH  +H    V  P+G R+ A  PG+
Sbjct: 20  SAEHPHQHQHYGAAVQVPQGGRRRAARPGV 49


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 174 DKKADEHKDHASFLPPYLEKAHLY 197
           ++K D+++DH   L   LEK+ L+
Sbjct: 137 NRKPDDNQDHLRRLEMSLEKSGLF 160


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,023
Number of Sequences: 317
Number of extensions: 4069
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 475
length of database: 114,650
effective HSP length: 59
effective length of query: 416
effective length of database: 95,947
effective search space: 39913952
effective search space used: 39913952
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)