GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000028-TA|BGIBMGA000028-PA|undefined
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0238 + 2496974-2497618,2497738-2497980,2498202-2499211,249...    30   3.5  
10_08_0107 + 14855606-14855914,14856068-14856142,14856920-14857021     29   8.1  
08_02_1499 - 27558872-27559015,27559544-27559666,27560214-275603...    29   8.1  

>10_01_0238 +
           2496974-2497618,2497738-2497980,2498202-2499211,
           2499329-2499370,2499465-2499492
          Length = 655

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 16/129 (12%)

Query: 292 PNSIQFNAKAPAKSLTAIINYLLKTY---MDFDADVTEYVVPAVEYAKQTLKLAEKAAQS 348
           P  IQ  A   A+S+ A   +++KT    M F AD    +   VE  + T+ + E    S
Sbjct: 535 PCIIQAEAYDSARSM-ATAEHMVKTALWCMQFSADHRPSMQKVVEMLQGTIDIDEPPNPS 593

Query: 349 VATREDYAAVSDRLTDALNLEVIEPVLRVYRAYRHSAAAPHCQEHLMCLVNRPEGDRKG- 407
                     S  L D+ +    EPV+++   YRH+   P   E    L+ R   D KG 
Sbjct: 594 ----------SSNLYDSASYSSCEPVMKMSFNYRHNLPYPSSDEGEFKLLRR-MSDAKGL 642

Query: 408 APGLKAGLT 416
             G +  LT
Sbjct: 643 GAGARTELT 651


>10_08_0107 + 14855606-14855914,14856068-14856142,14856920-14857021
          Length = 161

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 9/32 (28%), Positives = 21/32 (65%)

Query: 76  NEKEEKEKDSGNIGDILSGLGSLMGGQDGKID 107
           N + E+++D   +GD+L+   + +GG D +++
Sbjct: 86  NARAERDEDKTTLGDVLADAAAKLGGADKEVE 117


>08_02_1499 -
           27558872-27559015,27559544-27559666,27560214-27560312,
           27561257-27561307
          Length = 138

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 339 LKLAEKAAQSVATREDYAAVSDRLTDALNLE 369
           + + E +AQS+AT ED AA+ D+L +  + E
Sbjct: 104 ISVEESSAQSIATVEDAAALIDKLVEQKSAE 134


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,150,846
Number of Sequences: 37544
Number of extensions: 518009
Number of successful extensions: 1153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1151
Number of HSP's gapped (non-prelim): 3
length of query: 475
length of database: 14,793,348
effective HSP length: 85
effective length of query: 390
effective length of database: 11,602,108
effective search space: 4524822120
effective search space used: 4524822120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)