GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000028-TA|BGIBMGA000028-PA|undefined
         (475 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF011619-1|ABK41109.1|  478|Homo sapiens CDW9/WDR51B protein.          34   0.95 
BC026080-1|AAH26080.1|  478|Homo sapiens WD repeat domain 51B pr...    34   0.95 
AK074772-1|BAC11198.1|  478|Homo sapiens protein ( Homo sapiens ...    34   0.95 
BC034718-1|AAH34718.1|  633|Homo sapiens EPB41L2 protein protein.      32   3.8  
AY047584-1|AAK95850.1| 1005|Homo sapiens protein 4.1G protein.         32   3.8  
AL590014-3|CAI40761.1| 1005|Homo sapiens erythrocyte membrane pr...    32   3.8  
AL358943-1|CAI20310.1| 1005|Homo sapiens erythrocyte membrane pr...    32   3.8  
AF027299-1|AAC16923.1| 1005|Homo sapiens protein 4.1-G protein.        32   3.8  
AB209522-1|BAD92759.1|  676|Homo sapiens EPB41L2 protein variant...    32   3.8  
AB053276-1|BAB69430.1|  348|Homo sapiens TUWD12 protein.               32   5.1  
AB053266-1|BAB69057.1|  348|Homo sapiens TUWD12 protein.               32   5.1  

>EF011619-1|ABK41109.1|  478|Homo sapiens CDW9/WDR51B protein.
          Length = 478

 Score = 34.3 bits (75), Expect = 0.95
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 220 FKAFTGPDGKISFETMFKN-FENTSFRR-HWIKASAKYLTDMAVHVTKPENCVLHRYISM 277
           F A    D  I   +M++  F  + +R  HW++  AK+  D  + V+  E+  +  + + 
Sbjct: 116 FLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRC-AKFSPDGRLIVSCSEDKTIKIWDTT 174

Query: 278 AEYVINSFMESQGFPNSIQFN 298
            +  +N+F +S GF N + FN
Sbjct: 175 NKQCVNNFSDSVGFANFVDFN 195


>BC026080-1|AAH26080.1|  478|Homo sapiens WD repeat domain 51B
           protein.
          Length = 478

 Score = 34.3 bits (75), Expect = 0.95
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 220 FKAFTGPDGKISFETMFKN-FENTSFRR-HWIKASAKYLTDMAVHVTKPENCVLHRYISM 277
           F A    D  I   +M++  F  + +R  HW++  AK+  D  + V+  E+  +  + + 
Sbjct: 116 FLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRC-AKFSPDGRLIVSCSEDKTIKIWDTT 174

Query: 278 AEYVINSFMESQGFPNSIQFN 298
            +  +N+F +S GF N + FN
Sbjct: 175 NKQCVNNFSDSVGFANFVDFN 195


>AK074772-1|BAC11198.1|  478|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90291 fis, clone NT2RP1001031, weakly similar to
           VEGETATIBLE INCOMPATIBILITY PROTEIN HET-E-1. ).
          Length = 478

 Score = 34.3 bits (75), Expect = 0.95
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 220 FKAFTGPDGKISFETMFKN-FENTSFRR-HWIKASAKYLTDMAVHVTKPENCVLHRYISM 277
           F A    D  I   +M++  F  + +R  HW++  AK+  D  + V+  E+  +  + + 
Sbjct: 116 FLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRC-AKFSPDGRLIVSCSEDKTIKIWDTT 174

Query: 278 AEYVINSFMESQGFPNSIQFN 298
            +  +N+F +S GF N + FN
Sbjct: 175 NKQCVNNFSDSVGFANFVDFN 195


>BC034718-1|AAH34718.1|  633|Homo sapiens EPB41L2 protein protein.
          Length = 633

 Score = 32.3 bits (70), Expect = 3.8
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 130 REQKKEITFDNLMNLASSFTQNKEGGSYMPLIMSALKGFTKMEADKKADEHKDHASFLPP 189
           +E+ KE+  +N  N +S     +E GS  P    +     + + +K+  E +  + F+PP
Sbjct: 24  KEKPKEVA-ENQQNQSSD--PEEEKGSQPPPAAESQSSLRRQKREKETSESRGISRFIPP 80

Query: 190 YLEKAHLY 197
           +L+K   Y
Sbjct: 81  WLKKQKSY 88


>AY047584-1|AAK95850.1| 1005|Homo sapiens protein 4.1G protein.
          Length = 1005

 Score = 32.3 bits (70), Expect = 3.8
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 130 REQKKEITFDNLMNLASSFTQNKEGGSYMPLIMSALKGFTKMEADKKADEHKDHASFLPP 189
           +E+ KE+  +N  N +S     +E GS  P    +     + + +K+  E +  + F+PP
Sbjct: 24  KEKPKEVA-ENQQNQSSD--PEEEKGSQPPPAAESQSSLRRQKREKETSESRGISRFIPP 80

Query: 190 YLEKAHLY 197
           +L+K   Y
Sbjct: 81  WLKKQKSY 88


>AL590014-3|CAI40761.1| 1005|Homo sapiens erythrocyte membrane
           protein band 4.1-like 2 protein.
          Length = 1005

 Score = 32.3 bits (70), Expect = 3.8
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 130 REQKKEITFDNLMNLASSFTQNKEGGSYMPLIMSALKGFTKMEADKKADEHKDHASFLPP 189
           +E+ KE+  +N  N +S     +E GS  P    +     + + +K+  E +  + F+PP
Sbjct: 24  KEKPKEVA-ENQQNQSSD--PEEEKGSQPPPAAESQSSLRRQKREKETSESRGISRFIPP 80

Query: 190 YLEKAHLY 197
           +L+K   Y
Sbjct: 81  WLKKQKSY 88


>AL358943-1|CAI20310.1| 1005|Homo sapiens erythrocyte membrane
           protein band 4.1-like 2 protein.
          Length = 1005

 Score = 32.3 bits (70), Expect = 3.8
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 130 REQKKEITFDNLMNLASSFTQNKEGGSYMPLIMSALKGFTKMEADKKADEHKDHASFLPP 189
           +E+ KE+  +N  N +S     +E GS  P    +     + + +K+  E +  + F+PP
Sbjct: 24  KEKPKEVA-ENQQNQSSD--PEEEKGSQPPPAAESQSSLRRQKREKETSESRGISRFIPP 80

Query: 190 YLEKAHLY 197
           +L+K   Y
Sbjct: 81  WLKKQKSY 88


>AF027299-1|AAC16923.1| 1005|Homo sapiens protein 4.1-G protein.
          Length = 1005

 Score = 32.3 bits (70), Expect = 3.8
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 130 REQKKEITFDNLMNLASSFTQNKEGGSYMPLIMSALKGFTKMEADKKADEHKDHASFLPP 189
           +E+ KE+  +N  N +S     +E GS  P    +     + + +K+  E +  + F+PP
Sbjct: 24  KEKPKEVA-ENQQNQSSD--PEEEKGSQPPPAAESQSSLRRQKREKETSESRGISRFIPP 80

Query: 190 YLEKAHLY 197
           +L+K   Y
Sbjct: 81  WLKKQKSY 88


>AB209522-1|BAD92759.1|  676|Homo sapiens EPB41L2 protein variant
           protein.
          Length = 676

 Score = 32.3 bits (70), Expect = 3.8
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 130 REQKKEITFDNLMNLASSFTQNKEGGSYMPLIMSALKGFTKMEADKKADEHKDHASFLPP 189
           +E+ KE+  +N  N +S     +E GS  P    +     + + +K+  E +  + F+PP
Sbjct: 27  KEKPKEVA-ENQQNQSSD--PEEEKGSQPPPAAESQSSLRRQKREKETSESRGISRFIPP 83

Query: 190 YLEKAHLY 197
           +L+K   Y
Sbjct: 84  WLKKQKSY 91


>AB053276-1|BAB69430.1|  348|Homo sapiens TUWD12 protein.
          Length = 348

 Score = 31.9 bits (69), Expect = 5.1
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 247 HWIKASAKYLTDMAVHVTKPENCVLHRYISMAEYVINSFMESQGFPNSIQFN 298
           HW++  AK+  D  + V+  E+  +  + +  +  +N+F +S GF N + FN
Sbjct: 15  HWVRC-AKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFN 65


>AB053266-1|BAB69057.1|  348|Homo sapiens TUWD12 protein.
          Length = 348

 Score = 31.9 bits (69), Expect = 5.1
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 247 HWIKASAKYLTDMAVHVTKPENCVLHRYISMAEYVINSFMESQGFPNSIQFN 298
           HW++  AK+  D  + V+  E+  +  + +  +  +N+F +S GF N + FN
Sbjct: 15  HWVRC-AKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFN 65


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.318    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,820,379
Number of Sequences: 224733
Number of extensions: 2559662
Number of successful extensions: 4449
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4449
Number of HSP's gapped (non-prelim): 11
length of query: 475
length of database: 73,234,838
effective HSP length: 93
effective length of query: 382
effective length of database: 52,334,669
effective search space: 19991843558
effective search space used: 19991843558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 67 (31.1 bits)