GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000028-TA|BGIBMGA000028-PA|undefined
         (475 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00050-10|AAA50701.1|  153|Caenorhabditis elegans Myosin light c...    32   1.0  
L03412-1|AAA28112.1|  153|Caenorhabditis elegans alkali myosin l...    32   1.0  
AC006723-3|AAF59427.1|  881|Caenorhabditis elegans Hypothetical ...    32   1.0  
Z81142-7|CAB03507.1|  319|Caenorhabditis elegans Hypothetical pr...    31   2.3  
Z68270-5|CAA92570.1|  174|Caenorhabditis elegans Hypothetical pr...    31   2.3  
Z68270-6|CAE46688.1|  158|Caenorhabditis elegans Hypothetical pr...    30   3.1  
L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family ...    30   4.1  
L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family ...    30   4.1  
L25598-2|AAV58887.1|  780|Caenorhabditis elegans Calpain family ...    30   4.1  
AF036693-5|AAK29787.1|  434|Caenorhabditis elegans Hypothetical ...    29   5.4  
Z81553-4|CAB04492.2|  316|Caenorhabditis elegans Hypothetical pr...    29   9.5  

>U00050-10|AAA50701.1|  153|Caenorhabditis elegans Myosin light
           chain protein 3, isoforma protein.
          Length = 153

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 9/94 (9%)

Query: 90  DILSGLGSLMGGQ-DGKIDPAMIG------GMISMFASMGSTPKRE-KREQKKEITFDNL 141
           D+L  + +L   + DGKID   +G      G+    A +     +E KR+ +K +TF+  
Sbjct: 7   DVLKEIFNLYDEELDGKIDGTQVGDVARAAGLKPTQAMVTKAAGQEFKRKGEKRLTFEEW 66

Query: 142 MNLASSFTQNKEGGSYMPLIMSALKGFTKMEADK 175
           + +     + KE G+Y       LK F K E  K
Sbjct: 67  LPMYEQLAKEKEQGTYAD-FYEGLKVFDKEETGK 99


>L03412-1|AAA28112.1|  153|Caenorhabditis elegans alkali myosin
           light chain protein.
          Length = 153

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 9/94 (9%)

Query: 90  DILSGLGSLMGGQ-DGKIDPAMIG------GMISMFASMGSTPKRE-KREQKKEITFDNL 141
           D+L  + +L   + DGKID   +G      G+    A +     +E KR+ +K +TF+  
Sbjct: 7   DVLKEIFNLYDEELDGKIDGTQVGDVARAAGLKPTQAMVTKAAGQEFKRKGEKRLTFEEW 66

Query: 142 MNLASSFTQNKEGGSYMPLIMSALKGFTKMEADK 175
           + +     + KE G+Y       LK F K E  K
Sbjct: 67  LPMYEQLAKEKEQGTYAD-FYEGLKVFDKEETGK 99


>AC006723-3|AAF59427.1|  881|Caenorhabditis elegans Hypothetical
           protein Y19D10B.4 protein.
          Length = 881

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (9%)

Query: 258 DMAVHVTKPENCVLHRYISMAEYVINSFMESQGFPNSIQFNAKAPAKSLTAIINYLLKTY 317
           +M   V+K    V++ +I    Y++  F+ESQ      +   + P   ++   N  L   
Sbjct: 121 EMISKVSKNSKGVVNNWIE--NYIVYGFVESQSHTKIQKLFTENPDDVISFFNNMTL--- 175

Query: 318 MDFDADVTEYVVPAVEYAKQTL-KLAEKAAQSVAT---REDYAAVSDRLTD 364
             FD D T+ V+ A++ A+QT  K+   A   V T     D  A S R TD
Sbjct: 176 --FDGDDTQPVLTAIQNAQQTYPKMQAHALVLVFTDSPASDATAWSHRFTD 224


>Z81142-7|CAB03507.1|  319|Caenorhabditis elegans Hypothetical
           protein ZK1037.8 protein.
          Length = 319

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 12/90 (13%)

Query: 291 FPNSIQFNAKAPAKSLTAIINYLLKTYMDFDADVTEYV-----VPAVEYAKQTLKLAEKA 345
           +PN+ ++    P KSL  +IN+  K ++    ++T YV     +  V   K  L    KA
Sbjct: 166 YPNACEY---VPDKSLIFVINFYEKGWVKLAGNLTTYVLFVEIIVFVVALKVKLNRISKA 222

Query: 346 AQSVATREDYAAVSDRLTDALNLEVIEPVL 375
           + S  T      +  +   ALNL++  PVL
Sbjct: 223 SMSSVT----LRMQKKFIKALNLQISIPVL 248


>Z68270-5|CAA92570.1|  174|Caenorhabditis elegans Hypothetical
           protein ZC410.5a protein.
          Length = 174

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 56  SIIGNLMQGDNVKNLASLFNNEKEEKEKDSGNIGDILSGLGSLMGGQDGKIDPAM----- 110
           S +GN    +  +N   LF+N++ E EK+   + D+L+GL   + G +   + A      
Sbjct: 40  SDVGNFFS-NQFQNAKDLFSNDQNELEKNVQRVKDLLTGLKEKVKGLEPLANDAQKETLK 98

Query: 111 -IGGMISMFASMGSTPKRE--KREQKKEITFDNLM 142
            + G ++  +S  S  K E   + ++ ++ + N++
Sbjct: 99  KVDGFLAEVSSFQSEVKEEGSAKFEENKVKWQNMV 133


>Z68270-6|CAE46688.1|  158|Caenorhabditis elegans Hypothetical
           protein ZC410.5b protein.
          Length = 158

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 56  SIIGNLMQGDNVKNLASLFNNEKEEKEKDSGNIGDILSGLGSLMGG 101
           S +GN    +  +N   LF+N++ E EK+   + D+L+GL   + G
Sbjct: 40  SDVGNFFS-NQFQNAKDLFSNDQNELEKNVQRVKDLLTGLKEKVKG 84


>L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family
           protein 1, isoform b protein.
          Length = 737

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 86  GNIGDILSGLGSLMGGQDG 104
           G  GDIL G+GSL+GG  G
Sbjct: 123 GGFGDILGGIGSLIGGGGG 141


>L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family
           protein 1, isoform d protein.
          Length = 759

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 86  GNIGDILSGLGSLMGGQDG 104
           G  GDIL G+GSL+GG  G
Sbjct: 148 GGFGDILGGIGSLIGGGGG 166


>L25598-2|AAV58887.1|  780|Caenorhabditis elegans Calpain family
           protein 1, isoform a protein.
          Length = 780

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 86  GNIGDILSGLGSLMGGQDG 104
           G  GDIL G+GSL+GG  G
Sbjct: 169 GGFGDILGGIGSLIGGGGG 187


>AF036693-5|AAK29787.1|  434|Caenorhabditis elegans Hypothetical
           protein C49A9.5 protein.
          Length = 434

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 191 LEKAHLYWDIFINSEVGK-LVWEKTG-MKKMFKAFTGPDGKISFETMFKNFENTSFRRHW 248
           LE  H +  IF+N E GK    E  G ++++ +       K++      +F+     R  
Sbjct: 315 LELGHQFAGIFVNQENGKCFCKEYIGEIERVLEGKVNDTNKVNLTVKLLDFQPAGVNRRR 374

Query: 249 IKASAKYLTDM 259
              +AKY+ D+
Sbjct: 375 ASGTAKYIGDV 385


>Z81553-4|CAB04492.2|  316|Caenorhabditis elegans Hypothetical
           protein F56H6.4 protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 315 KTYMDFDADVTEYVVPAVEYAKQTLKLAEKAAQSVATREDYAAVSDRL 362
           KT M+F+  V +++VP V Y K+ +   +K   S   R+  + +++ +
Sbjct: 39  KTVMEFEG-VEDFIVPFVNYTKRFMVAPDKKLISCTLRKSMSQLAENI 85


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,240,459
Number of Sequences: 27539
Number of extensions: 451838
Number of successful extensions: 1202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1196
Number of HSP's gapped (non-prelim): 14
length of query: 475
length of database: 12,573,161
effective HSP length: 84
effective length of query: 391
effective length of database: 10,259,885
effective search space: 4011615035
effective search space used: 4011615035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)