GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000028-TA|BGIBMGA000028-PA|undefined
         (475 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.8  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   9.7  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   9.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 369 EVIEPVLRVYRAYRHSAAAPHCQEHLMCL 397
           EV  PVLR   A+ HS   P   +  +C+
Sbjct: 463 EVKSPVLRSPPAFSHSRCPPEIHKSCICV 491


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 369 EVIEPVLRVYRAYRHSAAAPHCQEHLMCL 397
           EV  PVLR   A+ HS   P   +  +C+
Sbjct: 463 EVKSPVLRSPPAFSHSRCPPEIHKSCICV 491


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 121 MGSTPKREKREQKKEITFDNLMNLASSFTQNKEGGSYMPLIMSA 164
           +G   + +KR Q KE  F NL  +     +   G  Y P +  A
Sbjct: 111 IGLVERHKKRGQTKE-EFQNLKEVMLEVLRQALGKQYTPEVAEA 153


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 121 MGSTPKREKREQKKEITFDNLMNLASSFTQNKEGGSYMPLIMSA 164
           +G   + +KR Q KE  F NL  +     +   G  Y P +  A
Sbjct: 111 IGLVERHKKRGQTKE-EFQNLKEVMLEVLRQALGKQYTPEVAEA 153


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,741
Number of Sequences: 429
Number of extensions: 5088
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 475
length of database: 140,377
effective HSP length: 60
effective length of query: 415
effective length of database: 114,637
effective search space: 47574355
effective search space used: 47574355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)