GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000028-TA|BGIBMGA000028-PA|undefined
         (475 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2, plast...    34   0.24 
At5g11900.1 68418.m01392 eukaryotic translation initiation facto...    33   0.55 
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast...    32   0.95 
At3g60740.1 68416.m06795 tubulin folding cofactor D identical to...    31   1.7  
At4g02510.1 68417.m00343 chloroplast outer membrane protein, put...    30   2.9  
At1g77220.1 68414.m08994 expressed protein contains Pfam profile...    29   5.1  
At3g54630.1 68416.m06044 expressed protein weak similarity to re...    29   6.7  
At3g49850.1 68416.m05450 myb family transcription factor contain...    29   6.7  
At1g67420.1 68414.m07674 24 kDa vacuolar protein, putative simil...    29   6.7  
At1g23010.1 68414.m02875 multi-copper oxidase type I family prot...    29   6.7  
At5g61720.1 68418.m07744 expressed protein predicted protein, Ar...    29   8.9  
At5g33393.1 68418.m03983 hypothetical protein                          29   8.9  
At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase cyc...    29   8.9  
At3g10180.1 68416.m01219 kinesin motor protein-related similar t...    29   8.9  
At1g76780.1 68414.m08935 expressed protein ; expression supporte...    29   8.9  

>At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2,
           plastidic / lipoamide dehydrogenase 2 (PTLPD2) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159284]
          Length = 567

 Score = 33.9 bits (74), Expect = 0.24
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 65  DNVKNLASLFNNEKEEKEKDSGNIGDILSGLGSLMGGQDGKIDPAMIGG--MISMFASMG 122
           D+  NLA+   N      K  G   DIL+G G+++G Q  K    +I G  +I    S+ 
Sbjct: 168 DHASNLATKIRNNLTNSMKALGV--DILTGFGAVLGPQKVKYGDNIITGKDIIIATGSVP 225

Query: 123 STPKREKREQKKEITFDNLMNLAS 146
             PK  + + K  IT D+ + L S
Sbjct: 226 FVPKGIEVDGKTVITSDHALKLES 249


>At5g11900.1 68418.m01392 eukaryotic translation initiation factor
           SUI1 family protein similar to SP|O43583
           Density-regulated protein (DRP1 protein) (Smooth muscle
           cell associated protein-3) {Homo sapiens}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 198

 Score = 32.7 bits (71), Expect = 0.55
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 67  VKNLASLFNNE-KEEKEKDSGNIGDILSGLGSLMGGQDGKIDPAMIGGMISMFASMGSTP 125
           V+N   L+ +  KE  EK + N+ D L  +G   GG DG    A  GG            
Sbjct: 37  VENAPDLYPDLLKEANEKAADNVSDKLQSVGISSGGADGAPSSAQTGGTSKKEEVKRLPG 96

Query: 126 KREKREQKKEITFDNLM 142
            + K++ ++E+  + ++
Sbjct: 97  GKVKKKDRQEVIIEKVV 113


>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
           plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159282]
          Length = 570

 Score = 31.9 bits (69), Expect = 0.95
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 65  DNVKNLASLFNNEKEEKEKDSGNIGDILSGLGSLMGGQD---GKIDPAMIGGMISMFASM 121
           D+  NLA+   N      K  G   DIL+G GS++G Q    GK +      +I    S+
Sbjct: 170 DHANNLATKIRNNLTNSMKAIGV--DILTGFGSVLGPQKVKYGKDNIITAKDIIIATGSV 227

Query: 122 GSTPKREKREQKKEITFDNLMNLAS 146
              PK  + + K  IT D+ + L S
Sbjct: 228 PFVPKGIEVDGKTVITSDHALKLES 252


>At3g60740.1 68416.m06795 tubulin folding cofactor D identical to
           tubulin folding cofactor D GI:20514263 from [Arabidopsis
           thaliana]
          Length = 1254

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 269 CVLHRYISMAEYVINSFMESQGFPNSIQFNAKAPAKSLTAIIN-YLLKTYMDFDADVTEY 327
           C+ HR  S   YV  +   S+    S      AP  ++TAI+    L    D D DV E 
Sbjct: 337 CLPHRSPSW-RYVAQTASLSENMSTSSS-QRLAPDHTVTAILQPESLDDQEDEDMDVPEI 394

Query: 328 VVPAVEYAKQTLKLAEKAAQSVATREDYAAVSDRLTDALNLEVIEPVLRVY 378
           +   +E     L+  +   +  A +     V+ RLT  L+ EV+  VL ++
Sbjct: 395 LEEIIEMLLSGLRDTDTVVRWSAAK-GIGRVTSRLTSVLSDEVLSSVLELF 444


>At4g02510.1 68417.m00343 chloroplast outer membrane protein,
           putative similar to chloroplast protein import component
           Toc159 [Pisum sativum] GI:8489806, chloroplast outer
           envelope protein 86 [Pisum sativum] GI:599958,
           GTP-binding protein [Pisum sativum] GI:576509
          Length = 1503

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 13/51 (25%), Positives = 28/51 (54%)

Query: 321 DADVTEYVVPAVEYAKQTLKLAEKAAQSVATREDYAAVSDRLTDALNLEVI 371
           + +  E +  + E AKQ L   EKA+  +    D A +S+ ++D ++ +++
Sbjct: 633 EEETEEMIFGSSEAAKQFLAELEKASSGIEAHSDEANISNNMSDRIDGQIV 683


>At1g77220.1 68414.m08994 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 484

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 303 AKSL-TAIINYLLKTYMDFDADVTEYVVPAVEYAKQTLKLAEKAAQSVATREDYAAV 358
           AK L T I +Y++   M   A V  YV PA  Y     K  E+  ++VA   DYA++
Sbjct: 289 AKELKTRIQDYIICIEMGIAAVVHLYVFPAAPY-----KRGERCVRNVAVMSDYASI 340


>At3g54630.1 68416.m06044 expressed protein weak similarity to
           retinoblastoma-associated protein HEC [Homo sapiens]
           GI:2501873
          Length = 568

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 282 INSFMESQGFPNSIQFNAKAPAKSLTAIINYLLKTYMDFDADVTEYVVPAVEYAK 336
           IN+F+ +  FP SI+ N     K ++  + +LL   +D+  D  ++    V + K
Sbjct: 68  INAFLSTHNFPISIRGNPVPSVKDISETLKFLLSA-LDYPCDSIKWDEDLVFFLK 121


>At3g49850.1 68416.m05450 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 295

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 203 NSEVGKLVWEK-TGMKKMFKAFTGPDGKISFETMFKNFENTSFRRHWIKASAKYLTDMAV 261
           ++ V K++ E  T +K+ F    GPDGK     + +NF+     +  + +  KYLT++  
Sbjct: 120 STSVDKIILEAITSLKRPF----GPDGKSILMYIEENFKMQPDMKRLVTSRLKYLTNVGT 175

Query: 262 HVTK 265
            V K
Sbjct: 176 LVKK 179


>At1g67420.1 68414.m07674 24 kDa vacuolar protein, putative similar
           to 24 kDa vacuolar protein VP24 [Ipomoea batatas]
           gi|5821406|dbj|BAA83809
          Length = 873

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 355 YAAVSDRLTDALNLEVIEPVLRVYRAYRHSAAAPHCQEHLMCLVNRPEGDRKGAPGLKAG 414
           YA +S  +   L+++ I P+       R S A     EH+  L    +G ++G PGLK  
Sbjct: 24  YALMSAIVYSVLHMKFISPLPANAPLERFSEA--RAVEHIRVLAEEIDGRQEGRPGLKEA 81

Query: 415 LT 416
            T
Sbjct: 82  AT 83


>At1g23010.1 68414.m02875 multi-copper oxidase type I family protein
           similar to SP|P07788 Spore coat protein A {Bacillus
           subtilis}; contains Pfam profile PF00394: Multicopper
           oxidase
          Length = 581

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 268 NCVLHRYISMAEYVINSFMESQGFPNSIQFNA 299
           N VL RYISM EYV NS   +    N + + A
Sbjct: 409 NAVLTRYISMYEYVSNSDEPTHLLVNGLPYEA 440


>At5g61720.1 68418.m07744 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 390

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 91  ILSGLGSLMGGQDGKIDP-AMIGGMISMFASMGSTPKREKREQKKEITFDNLMNLASSFT 149
           + + + SL G + G +D   M+ GM+SM    G      K+   KEITF+   +L SS  
Sbjct: 281 LFTAMISLDGTKGGSVDSWRMLDGMLSM----GKVLVDIKKSGSKEITFEQRRDLISSMV 336

Query: 150 Q 150
           +
Sbjct: 337 K 337


>At5g33393.1 68418.m03983 hypothetical protein
          Length = 435

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 235 MFKNFENTSFRRHWIKASAKYLTDMAVHVTKPENCVL 271
           MFK F+N    R+W++    +   MA +V K E C++
Sbjct: 278 MFK-FKNLPHTRYWVQEKLWFKESMAANVDKEELCLV 313


>At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein contains Pfam domain,
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 504

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 60  NLMQGDNVKNLASLFNNEKEEKEKD-SGNIGDILSGLGSLMGGQDG-KIDPAMIGGMISM 117
           N  +   V ++    N +KE  +KD S ++ D +        G+D  K D  M   ++S 
Sbjct: 249 NASESKEVLSVREALNAKKEAAQKDKSFSVSDTVGNSDDDDDGEDETKFDAKMRNQVLSR 308

Query: 118 FASMGSTPKREKREQK 133
              +G TP +  +++K
Sbjct: 309 RKEIGDTPSKPTQKKK 324


>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
            centromere protein E GB:4502781 [Homo sapiens]
          Length = 1348

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 11/33 (33%), Positives = 22/33 (66%)

Query: 324  VTEYVVPAVEYAKQTLKLAEKAAQSVATREDYA 356
            V E  +P + Y+  ++++ EKAA ++ ++ED A
Sbjct: 1261 VVEQEIPNLRYSSNSIEVVEKAAINMGSKEDKA 1293


>At1g76780.1 68414.m08935 expressed protein ; expression supported
           by MPSS
          Length = 1871

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 57  IIGNLMQGDNVKNLAS---LFNNEKEEKEKDSGNIGDILSG 94
           + G  ++G  +K L     ++ NE EEK+KD  N  + ++G
Sbjct: 757 VSGRYIKGTTIKELVENRGIYRNEHEEKKKDDANRPEKITG 797


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,724,066
Number of Sequences: 28952
Number of extensions: 429002
Number of successful extensions: 1126
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1121
Number of HSP's gapped (non-prelim): 16
length of query: 475
length of database: 12,070,560
effective HSP length: 84
effective length of query: 391
effective length of database: 9,638,592
effective search space: 3768689472
effective search space used: 3768689472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)