Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000027-TA|BGIBMGA000027-PA|IPR001283|Allergen V5/Tpx-1
related, IPR002413|Ves allergen
         (757 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   7.7  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    23   7.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 457 HKNIVDQNDVNHKEPTEAVLKSVEERV 483
           H  IV +N++   EP+E V     E V
Sbjct: 968 HIRIVAENEIGSSEPSETVTIITAEEV 994


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 393 HKRKQSIFAKQAKFQLPTIKNKMTQAKSKITDVIPRKDFTRAQKLVKSYISDKHRPYYGT 452
           H+     + ++  F  P IK +  +       V+  + F R +K + S   D+   + G 
Sbjct: 28  HEEPPLFYEERPDFVAPYIKVEADEE----APVLKSRSFGRKRKSISS---DEENSFQGK 80

Query: 453 TENRHKNIVDQNDVNHKEPTEAVLKSVEER 482
            ++R K      D+ H    + V+ +V ER
Sbjct: 81  HKSRRKAPQSFEDIQH----QRVMANVRER 106


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,966
Number of Sequences: 317
Number of extensions: 8418
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 2
length of query: 757
length of database: 114,650
effective HSP length: 62
effective length of query: 695
effective length of database: 94,996
effective search space: 66022220
effective search space used: 66022220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)