Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000025-TA|BGIBMGA000025-PA|undefined
         (479 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   4.7  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   6.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   6.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   6.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   6.2  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   6.2  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    22   8.2  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 307 KNSYYKNQMSTANNYKIFQKIPASSMILSNYDPFYS 342
           +N YY N      +Y+I    P  S   S+  P +S
Sbjct: 173 ENRYYNNSPDQYQSYQILLPTPTCSEASSSPTPSHS 208


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 232 HLSATSSQASYPPANMDDTNAYNNDNKDFMG 262
           H+S       +PP+   + N+Y     DF G
Sbjct: 21  HISGVVVDPKFPPSEEYNQNSYIPPGGDFFG 51


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 232 HLSATSSQASYPPANMDDTNAYNNDNKDFMG 262
           H+S       +PP+   + N+Y     DF G
Sbjct: 21  HISGVVVDPKFPPSEEYNQNSYIPPGGDFFG 51


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 127 IKNDTKVVDKERKENNDIEEARGLFSKYTYEYRLY 161
           ++ND +++     +NN +   R  F K    Y  Y
Sbjct: 150 LRNDFRLMSNNLNKNNVVATGRFTFHKKNLYYSFY 184


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 232 HLSATSSQASYPPANMDDTNAYNNDNKDFMG 262
           H+S       +PP+   + N+Y     DF G
Sbjct: 21  HISGVVVDPKFPPSEEYNQNSYIPPGGDFFG 51


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 232 HLSATSSQASYPPANMDDTNAYNNDNKDFMG 262
           H+S       +PP+   + N+Y     DF G
Sbjct: 21  HISGVVVDPKFPPSEEYNQNSYIPPGGDFFG 51


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 7/17 (41%), Positives = 15/17 (88%)

Query: 151 FSKYTYEYRLYQKIKSF 167
           F K++ E++L+QKI+++
Sbjct: 29  FEKFSLEHQLWQKIQAW 45


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,496
Number of Sequences: 317
Number of extensions: 5252
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 7
length of query: 479
length of database: 114,650
effective HSP length: 59
effective length of query: 420
effective length of database: 95,947
effective search space: 40297740
effective search space used: 40297740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)