Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000025-TA|BGIBMGA000025-PA|undefined
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    33   0.12 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    31   0.27 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    31   0.35 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    29   1.4  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    28   3.3  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    27   4.4  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    27   4.4  

>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 55  INKSDCHSTESSNINVLVSDKAPSTLQ-DFIRSLENVTEKEALLNKTMGYVENLIDNVLN 113
           + KS   ST +S+ N +  D+ PS L  D I + +     +  LN      EN + N++N
Sbjct: 22  VEKSKQLSTNASSSNFVKEDQIPSNLSIDNINTPQGDPIDKNNLNTN---TENNLPNIVN 78

Query: 114 YERIKIIDGVEIKIKNDTKVVDKERKENNDIEE 146
           ++ I   +  EIK K D +++    ++ N  +E
Sbjct: 79  FQNISSANSGEIKQK-DNEILFSSTEDINQHKE 110


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 43  SINEETKNNTVDINKSDCHSTESSNINVLVSDKAPSTLQDFIRSLENVTEKEALLNKTMG 102
           SI++         NK D  + +S+N++   S   PS+  +F  S++N       LN ++ 
Sbjct: 133 SIDQSVLKVAATNNKDDSSAVKSANVSFPSSSTPPSSDSNF-SSIQNTD-----LNTSIK 186

Query: 103 YVENLIDNVLNYERIKIIDGVEIKIKNDTKVV 134
           + EN+  N ++  + K+I      I N   ++
Sbjct: 187 FTENISANAIHVNQDKVIRSANNLIINSQPIL 218


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 9/105 (8%)

Query: 43   SINEETKNNTVDINKSDCHSTESSNINVLVSDKAPSTLQDFIRSLENVTEKEALLNKTMG 102
            S N++     +DI  S    T+S N+N+L  D    TL+D   SL+++       + +  
Sbjct: 1373 SFNKDLNQQLLDIETSPSEHTQSYNLNLL--DVLQHTLRD---SLKDIYTLNTGADNSSD 1427

Query: 103  YVENLIDNVLNYERIKIIDGVEIK-IKNDTKVVDKERKENNDIEE 146
             VE   DN+    +  ++D V  K + N+    D+    ++DI E
Sbjct: 1428 NVEENADNLF---QSSVLDHVHFKSVVNNEVPADERLAISDDIFE 1469


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 56  NKSDCHSTESSNINVLVSDKAPSTLQDFIRSLENVTEKEALLNKTMGYVENLIDNVLNYE 115
           N SD  + +S    +  ++K  S +        N +  +  +NK     EN +DNV N +
Sbjct: 38  NGSDLLNDDSEAAKITTNEKQSSPVDS-----HNESPNDTTINKGEDGNENEVDNVNNND 92

Query: 116 RIKIIDGVEIKIKNDTKVVDKERKENNDIEE 146
           + +  D VE + + +    ++E ++  D EE
Sbjct: 93  KKEDEDNVE-ENEEEADANEEEEEDEEDDEE 122


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 236 TSSQASYPPANMDDTNAYNNDNKDFMGYETNPTGTYAYPQDYATEGNDMEPGNIDMS 292
           TSSQ S PP ++ DT+ +   + D    E NP   ++  +  +   ++++   + +S
Sbjct: 175 TSSQHSTPPLSISDTSTHTGSSTD--NVEANPNTGFSSARKRSLRSSNLKKKFVPLS 229


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 234 SATSSQASYPPANMDDTNAYNNDNKDFMGYETNPTGTYAYPQD 276
           +A SS  S PP +  +T A N+D +     + NP   Y+ P D
Sbjct: 92  TAPSSAQSVPPTSSAETTADNSDTE----MKLNPIPAYSVPAD 130


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 41  DLSINEETKNNTVDINKSDCHSTESSNINVLVSDKAPSTLQDFIRSLENVTEKEALLNKT 100
           DLS+N   + +  D + S+   +ESS  + ++ +  P TL D    L+N T  E L  + 
Sbjct: 639 DLSVNSSGQISKQDFDNSNSIFSESSLSSPIIEE--PKTLID---CLKNFTHVEELSGEN 693

Query: 101 MGYVEN 106
           M   EN
Sbjct: 694 MFACEN 699


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,308
Number of Sequences: 5004
Number of extensions: 105875
Number of successful extensions: 363
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 8
length of query: 479
length of database: 2,362,478
effective HSP length: 75
effective length of query: 404
effective length of database: 1,987,178
effective search space: 802819912
effective search space used: 802819912
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)