Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000025-TA|BGIBMGA000025-PA|undefined
(479 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9453| Best HMM Match : Mucin (HMM E-Value=0.56) 35 0.13
SB_41789| Best HMM Match : Mucin (HMM E-Value=0.56) 35 0.17
SB_41192| Best HMM Match : Mucin (HMM E-Value=0.56) 35 0.17
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051) 31 1.5
SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06) 31 2.0
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15) 31 2.0
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.7
SB_20262| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.7
SB_13361| Best HMM Match : TPR_2 (HMM E-Value=0.0021) 30 4.7
SB_57673| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.2
SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47) 29 8.2
SB_14825| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.2
SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11) 29 8.2
>SB_9453| Best HMM Match : Mucin (HMM E-Value=0.56)
Length = 642
Score = 35.1 bits (77), Expect = 0.13
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 212 AMFLPSILGSFGKILGKGISHLSATSSQ-ASYPPANMD-DTNAYNNDNKDFMGYETNPTG 269
A+ S + GK +GK + +A SQ A PPA D +Y N DF N
Sbjct: 561 AVMQKSAIMGVGKAVGKAVGQPNAVRSQIAPQPPAMQPGDYTSYGNTGTDFSSQYVNRRP 620
Query: 270 TYAYPQDYATEGNDME 285
+ P DY ++
Sbjct: 621 PFMQPGDYTARAQTVK 636
>SB_41789| Best HMM Match : Mucin (HMM E-Value=0.56)
Length = 683
Score = 34.7 bits (76), Expect = 0.17
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 212 AMFLPSILGSFGKILGKGISHLSATSSQ-ASYPPANMD-DTNAYNNDNKDFMGYETNPTG 269
A+ S + GK +GK + +A SQ A PPA D +Y N DF N
Sbjct: 561 AVMQKSAIMGVGKAVGKAVGQPNAVRSQIAPQPPAMQPGDYTSYGNTGTDFSSQYVNRRP 620
Query: 270 TYAYPQDY 277
+ P DY
Sbjct: 621 PFMQPGDY 628
>SB_41192| Best HMM Match : Mucin (HMM E-Value=0.56)
Length = 683
Score = 34.7 bits (76), Expect = 0.17
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 212 AMFLPSILGSFGKILGKGISHLSATSSQ-ASYPPANMD-DTNAYNNDNKDFMGYETNPTG 269
A+ S + GK +GK + +A SQ A PPA D +Y N DF N
Sbjct: 561 AVMQKSAIMGVGKAVGKAVGQPNAVRSQIAPQPPAMQPGDYTSYGNTGTDFSSQYVNRRP 620
Query: 270 TYAYPQDY 277
+ P DY
Sbjct: 621 PFMQPGDY 628
>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
Length = 421
Score = 31.5 bits (68), Expect = 1.5
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 262 GYETNPTGTYAYPQDYATEGNDMEPGNIDMSRYGAGGPKVTYLPSKNSY 310
GY+ P G YA P EG + P N ++ Y A P+ Y P Y
Sbjct: 195 GYQQPPPGGYAPPPYVPQEGGGIPPQNHPLTNYPAPPPQ-GYAPPPGGY 242
>SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06)
Length = 618
Score = 31.1 bits (67), Expect = 2.0
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 239 QASYPPANMDDTNAYNNDNKDFMGYET-NPTGTYAYPQDYATEGNDMEP-GNIDMSRYGA 296
Q+ Y P+ + Y + N Y + NP Y YP + + P GN+ Y +
Sbjct: 207 QSRYYPSGNPQSRYYPSGNLQSRYYPSGNPQARY-YP--FGNPQSRYYPFGNLQPRYYPS 263
Query: 297 GGPKVTYLPSKN--SYYKNQMSTANNYKIFQKIPASSMILSNYDPFYSP 343
G P+ Y PS N S Y + + Y F + + N P Y P
Sbjct: 264 GNPQSRYYPSGNLQSRYYPSGNPHSRYYPFGNLQSRYYPFGNPQPRYYP 312
>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
Length = 1774
Score = 31.1 bits (67), Expect = 2.0
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 49 KNNTVDINKSDCHSTESSNINV-LVSDKAPST--LQDFIRSLENVTEKEALLNKTMGYVE 105
K TV+ N + HS+ S + N+ L +++ S L D I + + L +E
Sbjct: 1490 KMGTVEKNLKE-HSSASEHRNIALEAERTGSQERLNDLISQNDKLNLALKALENEKNEIE 1548
Query: 106 NLIDNVLNYERIKIIDGVEIKIKNDTKVVDKERKENNDIEEARGLF 151
+ + N K IDG E + ++ + K R+ +D+EE +F
Sbjct: 1549 QELQALKNNSDKKKIDGEEESLDRFSESISKLRQAEHDLEEKLEVF 1594
>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 30.7 bits (66), Expect = 2.7
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 12/141 (8%)
Query: 228 KGISHLSATSSQASYPPANMDDTNAYNNDNKDFMGYETNPTGTYAYPQDYATEGNDMEPG 287
KG S +A + A + NN +K +ET T T + + A +G D E G
Sbjct: 426 KGNSQHTAITQHAEKSQNTASPRHPTNNTDKATHKFETRNTPTLSIATERARKGPDEESG 485
Query: 288 NIDMSR--YGAG-------GPKVTYLPSKNSYYKNQMSTANNYKIFQKIPASSMILSNYD 338
+ +R YG ++T P+ NS + STA + + P+ S++ +
Sbjct: 486 LVTSTRPTYGVSTSTRPTRTSQMTENPADNSVAEVHSSTA---RFYSPTPSQSILHACKL 542
Query: 339 PFYSPLLSRLDGIFARLGLAP 359
P P + + +G+ P
Sbjct: 543 PILDPWDRSIKHLVTDVGVDP 563
>SB_20262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 29.9 bits (64), Expect = 4.7
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 246 NMDDTNAYNNDNKDFMGYETNPTGTYAYPQDYATEGNDMEPGNIDMSRY 294
N ++ N NNDN D G N Y +Y + ND N + Y
Sbjct: 103 NDNNDNNDNNDNNDNNGNNDNNDNNDNYDNNYNNDNNDNNDNNDNYDNY 151
>SB_13361| Best HMM Match : TPR_2 (HMM E-Value=0.0021)
Length = 304
Score = 29.9 bits (64), Expect = 4.7
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 71 LVSDKAPSTLQDFIRSLENVTEKEALLNKTMGYVENLIDNVLNYERIKIIDGVEIKIKND 130
+ +KAP T ++ + L+N +K NK Y + L + E I+ I K +
Sbjct: 1 MADEKAPKTAEELDQELDNYIDKMIEKNKNYKYKDRLSEETWE-EEIENIPLFMTKPPEE 59
Query: 131 TKVVDK--------ERKENNDIEEARGLFSKYTYEYRLYQKIKSFIDTHVLSISL 177
K + + ++ N +E A + YEY+ + K ID + I L
Sbjct: 60 GKSISDSIAALQAIKYEDENPVENALSYKEEGNYEYK-RKNFKKAIDAYTEGIKL 113
>SB_57673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 508
Score = 29.5 bits (63), Expect = 6.2
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 89 NVTEKEALLNKTMGYVENLIDNVLNYERIKIIDGVEIKIKNDTKVVDKERK 139
N TE+E K +G++E ID VLN + + + I + +D RK
Sbjct: 340 NKTEEEQATEKELGHMELEIDEVLNERECQCKEALAIAEEKHQNYIDACRK 390
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 29.1 bits (62), Expect = 8.2
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 39 CQDLSINEETKNNTVDINKSDCHSTESSNINVLVSDKAPSTLQDFIR---------SLEN 89
C+ L+ EET N+T D N+ D ++ +S+ I V +K S+ D ++ S +
Sbjct: 2213 CEKLN-KEETNNHTHDSNEFDANAGKST-IAVEPLEKKESSHTDKVQTSNIESNSGSSNS 2270
Query: 90 VTEKEALLNKTMGYVENLIDNVLNYERIKIIDGVEIKIKN 129
++ A + M ++EN + N + E + + +++I+N
Sbjct: 2271 SADENAKKSCDMNHIENTLTNSKDVEIENMTNSKDVEIEN 2310
>SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)
Length = 626
Score = 29.1 bits (62), Expect = 8.2
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 238 SQASYPPANMDDTNAYNNDNKDFMGYETNPTGTYAYPQDYATEGND 283
S +SY P + + + N+ + DF Y T PTG P ++A G+D
Sbjct: 436 SPSSYKPDRLLNLSVPNDYDDDFNTYLTGPTGETPAP-NFAALGSD 480
>SB_14825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 29.1 bits (62), Expect = 8.2
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 44 INEETKNNTVDINKSDCHSTESSN-INVLVSDKAPSTLQDFIRSLENVTEKEALLN 98
+ E TV++N D + + I+ + SDK T+ F + L+ + K+A+LN
Sbjct: 8 VGREYGMTTVELNSIDGKDGAAQDVIDYIKSDKPDLTVYTFCKYLKTIKRKDAVLN 63
>SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)
Length = 806
Score = 29.1 bits (62), Expect = 8.2
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 87 LENVTEKEALLNKTMGYVE-NLIDNVLNYERIKIIDGVEIKIKNDTKVVDKERKENNDIE 145
++ ++++EALL K + + +++ L E I +G+ I ++T VVD K + +
Sbjct: 292 VKKISKEEALLIKELEQADFDMLLVNLRMEATFIKEGMNINWVSETGVVDNIEKVIKEYK 351
Query: 146 EARGL 150
E RGL
Sbjct: 352 ETRGL 356
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.133 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,060,463
Number of Sequences: 59808
Number of extensions: 674118
Number of successful extensions: 2679
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2656
Number of HSP's gapped (non-prelim): 39
length of query: 479
length of database: 16,821,457
effective HSP length: 85
effective length of query: 394
effective length of database: 11,737,777
effective search space: 4624684138
effective search space used: 4624684138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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