GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000025-TA|BGIBMGA000025-PA|undefined
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9453| Best HMM Match : Mucin (HMM E-Value=0.56)                     35   0.13 
SB_41789| Best HMM Match : Mucin (HMM E-Value=0.56)                    35   0.17 
SB_41192| Best HMM Match : Mucin (HMM E-Value=0.56)                    35   0.17 
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)          31   1.5  
SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06)            31   2.0  
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)            31   2.0  
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.7  
SB_20262| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.7  
SB_13361| Best HMM Match : TPR_2 (HMM E-Value=0.0021)                  30   4.7  
SB_57673| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.2  
SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)                   29   8.2  
SB_14825| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.2  
SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)                 29   8.2  

>SB_9453| Best HMM Match : Mucin (HMM E-Value=0.56)
          Length = 642

 Score = 35.1 bits (77), Expect = 0.13
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 212 AMFLPSILGSFGKILGKGISHLSATSSQ-ASYPPANMD-DTNAYNNDNKDFMGYETNPTG 269
           A+   S +   GK +GK +   +A  SQ A  PPA    D  +Y N   DF     N   
Sbjct: 561 AVMQKSAIMGVGKAVGKAVGQPNAVRSQIAPQPPAMQPGDYTSYGNTGTDFSSQYVNRRP 620

Query: 270 TYAYPQDYATEGNDME 285
            +  P DY      ++
Sbjct: 621 PFMQPGDYTARAQTVK 636


>SB_41789| Best HMM Match : Mucin (HMM E-Value=0.56)
          Length = 683

 Score = 34.7 bits (76), Expect = 0.17
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 212 AMFLPSILGSFGKILGKGISHLSATSSQ-ASYPPANMD-DTNAYNNDNKDFMGYETNPTG 269
           A+   S +   GK +GK +   +A  SQ A  PPA    D  +Y N   DF     N   
Sbjct: 561 AVMQKSAIMGVGKAVGKAVGQPNAVRSQIAPQPPAMQPGDYTSYGNTGTDFSSQYVNRRP 620

Query: 270 TYAYPQDY 277
            +  P DY
Sbjct: 621 PFMQPGDY 628


>SB_41192| Best HMM Match : Mucin (HMM E-Value=0.56)
          Length = 683

 Score = 34.7 bits (76), Expect = 0.17
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 212 AMFLPSILGSFGKILGKGISHLSATSSQ-ASYPPANMD-DTNAYNNDNKDFMGYETNPTG 269
           A+   S +   GK +GK +   +A  SQ A  PPA    D  +Y N   DF     N   
Sbjct: 561 AVMQKSAIMGVGKAVGKAVGQPNAVRSQIAPQPPAMQPGDYTSYGNTGTDFSSQYVNRRP 620

Query: 270 TYAYPQDY 277
            +  P DY
Sbjct: 621 PFMQPGDY 628


>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
          Length = 421

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 262 GYETNPTGTYAYPQDYATEGNDMEPGNIDMSRYGAGGPKVTYLPSKNSY 310
           GY+  P G YA P     EG  + P N  ++ Y A  P+  Y P    Y
Sbjct: 195 GYQQPPPGGYAPPPYVPQEGGGIPPQNHPLTNYPAPPPQ-GYAPPPGGY 242


>SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06)
          Length = 618

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 239 QASYPPANMDDTNAYNNDNKDFMGYET-NPTGTYAYPQDYATEGNDMEP-GNIDMSRYGA 296
           Q+ Y P+    +  Y + N     Y + NP   Y YP  +    +   P GN+    Y +
Sbjct: 207 QSRYYPSGNPQSRYYPSGNLQSRYYPSGNPQARY-YP--FGNPQSRYYPFGNLQPRYYPS 263

Query: 297 GGPKVTYLPSKN--SYYKNQMSTANNYKIFQKIPASSMILSNYDPFYSP 343
           G P+  Y PS N  S Y    +  + Y  F  + +      N  P Y P
Sbjct: 264 GNPQSRYYPSGNLQSRYYPSGNPHSRYYPFGNLQSRYYPFGNPQPRYYP 312


>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
          Length = 1774

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 49   KNNTVDINKSDCHSTESSNINV-LVSDKAPST--LQDFIRSLENVTEKEALLNKTMGYVE 105
            K  TV+ N  + HS+ S + N+ L +++  S   L D I   + +      L      +E
Sbjct: 1490 KMGTVEKNLKE-HSSASEHRNIALEAERTGSQERLNDLISQNDKLNLALKALENEKNEIE 1548

Query: 106  NLIDNVLNYERIKIIDGVEIKIKNDTKVVDKERKENNDIEEARGLF 151
              +  + N    K IDG E  +   ++ + K R+  +D+EE   +F
Sbjct: 1549 QELQALKNNSDKKKIDGEEESLDRFSESISKLRQAEHDLEEKLEVF 1594


>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 12/141 (8%)

Query: 228 KGISHLSATSSQASYPPANMDDTNAYNNDNKDFMGYETNPTGTYAYPQDYATEGNDMEPG 287
           KG S  +A +  A          +  NN +K    +ET  T T +   + A +G D E G
Sbjct: 426 KGNSQHTAITQHAEKSQNTASPRHPTNNTDKATHKFETRNTPTLSIATERARKGPDEESG 485

Query: 288 NIDMSR--YGAG-------GPKVTYLPSKNSYYKNQMSTANNYKIFQKIPASSMILSNYD 338
            +  +R  YG           ++T  P+ NS  +   STA   + +   P+ S++ +   
Sbjct: 486 LVTSTRPTYGVSTSTRPTRTSQMTENPADNSVAEVHSSTA---RFYSPTPSQSILHACKL 542

Query: 339 PFYSPLLSRLDGIFARLGLAP 359
           P   P    +  +   +G+ P
Sbjct: 543 PILDPWDRSIKHLVTDVGVDP 563


>SB_20262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 246 NMDDTNAYNNDNKDFMGYETNPTGTYAYPQDYATEGNDMEPGNIDMSRY 294
           N ++ N  NNDN D  G   N      Y  +Y  + ND    N +   Y
Sbjct: 103 NDNNDNNDNNDNNDNNGNNDNNDNNDNYDNNYNNDNNDNNDNNDNYDNY 151


>SB_13361| Best HMM Match : TPR_2 (HMM E-Value=0.0021)
          Length = 304

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 10/115 (8%)

Query: 71  LVSDKAPSTLQDFIRSLENVTEKEALLNKTMGYVENLIDNVLNYERIKIIDGVEIKIKND 130
           +  +KAP T ++  + L+N  +K    NK   Y + L +     E I+ I     K   +
Sbjct: 1   MADEKAPKTAEELDQELDNYIDKMIEKNKNYKYKDRLSEETWE-EEIENIPLFMTKPPEE 59

Query: 131 TKVVDK--------ERKENNDIEEARGLFSKYTYEYRLYQKIKSFIDTHVLSISL 177
            K +          + ++ N +E A     +  YEY+  +  K  ID +   I L
Sbjct: 60  GKSISDSIAALQAIKYEDENPVENALSYKEEGNYEYK-RKNFKKAIDAYTEGIKL 113


>SB_57673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 508

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 89  NVTEKEALLNKTMGYVENLIDNVLNYERIKIIDGVEIKIKNDTKVVDKERK 139
           N TE+E    K +G++E  ID VLN    +  + + I  +     +D  RK
Sbjct: 340 NKTEEEQATEKELGHMELEIDEVLNERECQCKEALAIAEEKHQNYIDACRK 390


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 11/100 (11%)

Query: 39   CQDLSINEETKNNTVDINKSDCHSTESSNINVLVSDKAPSTLQDFIR---------SLEN 89
            C+ L+  EET N+T D N+ D ++ +S+ I V   +K  S+  D ++         S  +
Sbjct: 2213 CEKLN-KEETNNHTHDSNEFDANAGKST-IAVEPLEKKESSHTDKVQTSNIESNSGSSNS 2270

Query: 90   VTEKEALLNKTMGYVENLIDNVLNYERIKIIDGVEIKIKN 129
              ++ A  +  M ++EN + N  + E   + +  +++I+N
Sbjct: 2271 SADENAKKSCDMNHIENTLTNSKDVEIENMTNSKDVEIEN 2310


>SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)
          Length = 626

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 238 SQASYPPANMDDTNAYNNDNKDFMGYETNPTGTYAYPQDYATEGND 283
           S +SY P  + + +  N+ + DF  Y T PTG    P ++A  G+D
Sbjct: 436 SPSSYKPDRLLNLSVPNDYDDDFNTYLTGPTGETPAP-NFAALGSD 480


>SB_14825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 44 INEETKNNTVDINKSDCHSTESSN-INVLVSDKAPSTLQDFIRSLENVTEKEALLN 98
          +  E    TV++N  D     + + I+ + SDK   T+  F + L+ +  K+A+LN
Sbjct: 8  VGREYGMTTVELNSIDGKDGAAQDVIDYIKSDKPDLTVYTFCKYLKTIKRKDAVLN 63


>SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)
          Length = 806

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 87  LENVTEKEALLNKTMGYVE-NLIDNVLNYERIKIIDGVEIKIKNDTKVVDKERKENNDIE 145
           ++ ++++EALL K +   + +++   L  E   I +G+ I   ++T VVD   K   + +
Sbjct: 292 VKKISKEEALLIKELEQADFDMLLVNLRMEATFIKEGMNINWVSETGVVDNIEKVIKEYK 351

Query: 146 EARGL 150
           E RGL
Sbjct: 352 ETRGL 356


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,060,463
Number of Sequences: 59808
Number of extensions: 674118
Number of successful extensions: 2679
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2656
Number of HSP's gapped (non-prelim): 39
length of query: 479
length of database: 16,821,457
effective HSP length: 85
effective length of query: 394
effective length of database: 11,737,777
effective search space: 4624684138
effective search space used: 4624684138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)