GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000025-TA|BGIBMGA000025-PA|undefined
         (479 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    28   0.48 
AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    26   1.9  
AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein...    25   3.4  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    25   5.9  
AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein p...    25   5.9  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   7.8  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 28.3 bits (60), Expect = 0.48
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 114  YERIKIIDGVEIKIKNDTKVVDKERKENNDIEEARGLFSKYTYEYRLYQKIKSFIDTHVL 173
            Y+ + I+D V+ K K   + V   +KEN D   + G   +   + R   ++     TH+ 
Sbjct: 972  YDPLGIVDTVKAKAKQFMQRVWSLKKENGD---SYGWDEEIPQQMRQEWEVFERQLTHLQ 1028

Query: 174  SISLPKAAKFMGFRSFGLNKF 194
             + +P+    +G R+  ++ F
Sbjct: 1029 EVQVPRCVTIVGARNIQIHGF 1049


>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 176 SLPKAAKFMGFRSFGLNKFFLPLLIGGQVLIKTILFAMFLPSI 218
           S  + AKF+G + F L+K  L ++    +      +A FLP+I
Sbjct: 423 SSSRLAKFIGEQEFELSKHVLDVIYSQTLCWLGTFYAPFLPAI 465


>AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 695

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 234 SATSSQASYPPANMDDTNAYNNDNKDFMGYETNPTGTYAYPQDYATEGN 282
           S+ S + S      DD ++++N N D  G++      Y Y   Y T GN
Sbjct: 135 SSKSLRKSPQAHTTDDESSFDNLNNDMKGHDFIDNIMYIY---YGTNGN 180


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 333 ILSNYDPFYSPLLSRLDGIFARLGLAPSE 361
           +LSNY+    P+ +  D +  +LGL  S+
Sbjct: 43  LLSNYNRLIRPVSNNTDTVLVKLGLRLSQ 71


>AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein
           protein.
          Length = 344

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 2/100 (2%)

Query: 357 LAPSENAVTDSPQ-MGGQSLSDMKLEACREQLICLMYANPAKYAPYSNLVSAQLSRELNE 415
           L P   AV + P    G ++++  +   +++        P K  P + L+S   S EL +
Sbjct: 74  LTPVREAVENIPSPRNGPNINEGSINKRKKKKSKKKQNKPRK-RPEALLISDCTSEELAK 132

Query: 416 LRRPVSDNPEILRFFKYMRAARRGQEGVDCVTLHPGCSTS 455
           L + +  +  +    + +   RR Q G   + L  G S S
Sbjct: 133 LLKEMKQSDALKSVGETISKVRRAQNGGMLLELKQGSSAS 172


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 115 ERIKIIDGVEIKIKNDTKVVDKERKENN 142
           + I ++DG E KI+ D  ++   R+E N
Sbjct: 360 QEISVLDGKEAKIRADNDLLMGRRQELN 387


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 496,284
Number of Sequences: 2123
Number of extensions: 20444
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 6
length of query: 479
length of database: 516,269
effective HSP length: 67
effective length of query: 412
effective length of database: 374,028
effective search space: 154099536
effective search space used: 154099536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)