GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000025-TA|BGIBMGA000025-PA|undefined
         (479 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY358106-1|AAQ88473.1|   78|Homo sapiens LCII3035 protein.             35   0.72 
BC001665-1|AAH01665.1|  544|Homo sapiens ABLIM3 protein protein.       34   0.96 
Z15005-1|CAA78727.1| 2663|Homo sapiens CENP-E protein.                 32   3.9  
AB209996-1|BAE06078.1| 2585|Homo sapiens CENPE variant protein p...    32   3.9  
BC012543-1|AAH12543.1|  153|Homo sapiens ORM1-like 2 (S. cerevis...    32   5.1  
AK223180-1|BAD96900.1|  153|Homo sapiens ORMDL2 variant protein.       32   5.1  
AF395706-1|AAM43505.1|  153|Homo sapiens ORMDL2 protein.               32   5.1  
AF395705-1|AAM43504.1|  153|Homo sapiens ORMDL2 protein.               32   5.1  
AB064961-1|BAC11712.1|  153|Homo sapiens adoplin-2 protein.            32   5.1  
BC099646-1|AAH99646.1|  305|Homo sapiens NAALAD2 protein protein.      31   6.8  
BC070077-1|AAH70077.1|  968|Homo sapiens serine/threonine kinase...    31   8.9  
AB015718-1|BAA35073.1|  968|Homo sapiens protein kinase protein.       31   8.9  

>AY358106-1|AAQ88473.1|   78|Homo sapiens LCII3035 protein.
          Length = 78

 Score = 34.7 bits (76), Expect = 0.72
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 160 LYQKIKSFIDTHVLSISLPKAAKFMGFRSFGLNKFFLPLLIGG 202
           L++ + ++ID HV S+ +PK   +    SF L  F+ P L  G
Sbjct: 15  LFELLLAYIDCHVPSVGMPKVRGYFSVCSFALWNFYWPRLFKG 57


>BC001665-1|AAH01665.1|  544|Homo sapiens ABLIM3 protein protein.
          Length = 544

 Score = 34.3 bits (75), Expect = 0.96
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 286 PGNIDMSRYGAGGPKVTYLPSKNSYYKN-QMSTANNYKIFQKIPASSMILSNYDPFYSP 343
           PG ID   Y   G   T+  S + YY++  +STA   K  + I  +    S Y P YSP
Sbjct: 312 PGYIDSPTYSRQGMSPTFSRSPHHYYRSGDLSTATKSKTSEDISQT----SKYSPIYSP 366


>Z15005-1|CAA78727.1| 2663|Homo sapiens CENP-E protein.
          Length = 2663

 Score = 32.3 bits (70), Expect = 3.9
 Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 5/132 (3%)

Query: 41   DLSINEETKNNTVDINKSDCHSTESSNINVLVSDK-APSTL---QDFIRSLENVTEKEAL 96
            DL   +E+     D  KSD H T + NI+     + A  +L   Q+ I +L++   +E  
Sbjct: 933  DLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVS 992

Query: 97   LNKTMGYVENLIDNVLNYERIKIIDGVEIKIKNDTKVVDKERKENNDIEEARGLFSKYTY 156
             N  M        +    + + I    +++ KN T+ +  + K+N  IE+ R +FS    
Sbjct: 993  RNLHMEENTGETKDEFQQKMVGIDKKQDLEAKN-TQTLTADVKDNEIIEQQRKIFSLIQE 1051

Query: 157  EYRLYQKIKSFI 168
            +  L Q ++S I
Sbjct: 1052 KNELQQMLESVI 1063


>AB209996-1|BAE06078.1| 2585|Homo sapiens CENPE variant protein
            protein.
          Length = 2585

 Score = 32.3 bits (70), Expect = 3.9
 Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 5/132 (3%)

Query: 41   DLSINEETKNNTVDINKSDCHSTESSNINVLVSDK-APSTL---QDFIRSLENVTEKEAL 96
            DL   +E+     D  KSD H T + NI+     + A  +L   Q+ I +L++   +E  
Sbjct: 913  DLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVS 972

Query: 97   LNKTMGYVENLIDNVLNYERIKIIDGVEIKIKNDTKVVDKERKENNDIEEARGLFSKYTY 156
             N  M        +    + + I    +++ KN T+ +  + K+N  IE+ R +FS    
Sbjct: 973  RNLHMEENTGETKDEFQQKMVGIDKKQDLEAKN-TQTLTADVKDNEIIEQQRKIFSLIQE 1031

Query: 157  EYRLYQKIKSFI 168
            +  L Q ++S I
Sbjct: 1032 KNELQQMLESVI 1043


>BC012543-1|AAH12543.1|  153|Homo sapiens ORM1-like 2 (S.
           cerevisiae) protein.
          Length = 153

 Score = 31.9 bits (69), Expect = 5.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 158 YRLYQKIKSFIDT-HVLSISLPKAAKFMGFRSFGLNKF 194
           Y  Y      I+T  +LS+ LPK  +F G R FG+NK+
Sbjct: 116 YTKYDAAHFLINTASLLSVLLPKLPQFHGVRVFGINKY 153


>AK223180-1|BAD96900.1|  153|Homo sapiens ORMDL2 variant protein.
          Length = 153

 Score = 31.9 bits (69), Expect = 5.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 158 YRLYQKIKSFIDT-HVLSISLPKAAKFMGFRSFGLNKF 194
           Y  Y      I+T  +LS+ LPK  +F G R FG+NK+
Sbjct: 116 YTKYDAAHFLINTASLLSVLLPKLPQFHGVRVFGINKY 153


>AF395706-1|AAM43505.1|  153|Homo sapiens ORMDL2 protein.
          Length = 153

 Score = 31.9 bits (69), Expect = 5.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 158 YRLYQKIKSFIDT-HVLSISLPKAAKFMGFRSFGLNKF 194
           Y  Y      I+T  +LS+ LPK  +F G R FG+NK+
Sbjct: 116 YTKYDAAHFLINTASLLSVLLPKLPQFHGVRVFGINKY 153


>AF395705-1|AAM43504.1|  153|Homo sapiens ORMDL2 protein.
          Length = 153

 Score = 31.9 bits (69), Expect = 5.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 158 YRLYQKIKSFIDT-HVLSISLPKAAKFMGFRSFGLNKF 194
           Y  Y      I+T  +LS+ LPK  +F G R FG+NK+
Sbjct: 116 YTKYDAAHFLINTASLLSVLLPKLPQFHGVRVFGINKY 153


>AB064961-1|BAC11712.1|  153|Homo sapiens adoplin-2 protein.
          Length = 153

 Score = 31.9 bits (69), Expect = 5.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 158 YRLYQKIKSFIDT-HVLSISLPKAAKFMGFRSFGLNKF 194
           Y  Y      I+T  +LS+ LPK  +F G R FG+NK+
Sbjct: 116 YTKYDAAHFLINTASLLSVLLPKLPQFHGVRVFGINKY 153


>BC099646-1|AAH99646.1|  305|Homo sapiens NAALAD2 protein protein.
          Length = 305

 Score = 31.5 bits (68), Expect = 6.8
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 255 NDNKDFMGYETNPTGTYAYPQDYATEGNDMEPGNIDMSRYGAGGPKVTYLPSKNSYYKNQ 314
           +D  D+   E  P     YP+ +   G   + GN+ ++  GAG P     P+K + Y  Q
Sbjct: 219 SDPADYFAPEVQP-----YPKGWNLPGTAAQRGNV-LNLNGAGDPLTPGYPAKGTSYLLQ 272

Query: 315 MSTAN 319
           ++T N
Sbjct: 273 VATTN 277


>BC070077-1|AAH70077.1|  968|Homo sapiens serine/threonine kinase 10
           protein.
          Length = 968

 Score = 31.1 bits (67), Expect = 8.9
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 8/71 (11%)

Query: 97  LNKTMGYVE----NLIDNVLNYERIKIIDGVEIKIKNDTKVVDKERKENNDIEEARGLFS 152
           LNK MG +      L    L   R  ++DGVE+ I   +K++ ++ K++   EE R L  
Sbjct: 508 LNKEMGSLSIKDPKLYKKTLKRTRKFVVDGVEVSI-TTSKIISEDEKKD---EEMRFLRR 563

Query: 153 KYTYEYRLYQK 163
           +   E RL QK
Sbjct: 564 QELRELRLLQK 574


>AB015718-1|BAA35073.1|  968|Homo sapiens protein kinase protein.
          Length = 968

 Score = 31.1 bits (67), Expect = 8.9
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 8/71 (11%)

Query: 97  LNKTMGYVE----NLIDNVLNYERIKIIDGVEIKIKNDTKVVDKERKENNDIEEARGLFS 152
           LNK MG +      L    L   R  ++DGVE+ I   +K++ ++ K++   EE R L  
Sbjct: 508 LNKEMGSLSIKDPKLYKKTLKRTRKFVVDGVEVSI-TTSKIISEDEKKD---EEMRFLRR 563

Query: 153 KYTYEYRLYQK 163
           +   E RL QK
Sbjct: 564 QELRELRLLQK 574


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.317    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,854,639
Number of Sequences: 224733
Number of extensions: 2975014
Number of successful extensions: 6274
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6269
Number of HSP's gapped (non-prelim): 16
length of query: 479
length of database: 73,234,838
effective HSP length: 93
effective length of query: 386
effective length of database: 52,334,669
effective search space: 20201182234
effective search space used: 20201182234
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 67 (31.1 bits)