GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000025-TA|BGIBMGA000025-PA|undefined
         (479 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.3  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   5.6  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   7.4  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   9.8  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   9.8  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   9.8  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   9.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.8  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 333 ILSNYDPFYSPLLSRLDGIFARLGLAPSE 361
           +LSNY+    P+ +  D +  +LGL  S+
Sbjct: 28  LLSNYNRLIRPVSNNNDTVVVKLGLRLSQ 56


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 322 KIFQKIPASSMI----LSNYDPFYSPLLSRLDGIFARLGLAPSE 361
           KIF+  P +  +    LSNY+    P+++  + +  +LGL  S+
Sbjct: 26  KIFEANPDTKRLYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQ 69


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 45  NEETKNNTVDINKSDCHSTESSNINVLVSDKAPSTLQDFIRSLENV 90
           +E +K+ + D    D  +T +++  V++SDK P  +Q     L+ +
Sbjct: 77  SERSKSRSPD--SRDRSNTSNTSKTVILSDKGPEGIQINATELQKI 120


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 45  NEETKNNTVDINKSDCHSTESSNINVLVSDKAPSTLQDFIRSLENV 90
           +E +K+ + D    D  +T +++  +++SDK P  +Q     L+ +
Sbjct: 77  SERSKSRSPD--SRDKSNTSNTSKTIILSDKGPEGIQINATELQKI 120


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 233 LSATSSQASYPPANMDDTNAYNNDN-KDFMGYETN 266
           +S+ S+   Y   N  + N YNN+N K    Y  N
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNIN 116


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 233 LSATSSQASYPPANMDDTNAYNNDN-KDFMGYETN 266
           +S+ S+   Y   N  + N YNN+N K    Y  N
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNIN 116


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 233 LSATSSQASYPPANMDDTNAYNNDN-KDFMGYETN 266
           +S+ S+   Y   N  + N YNN+N K    Y  N
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNIN 116


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 233 LSATSSQASYPPANMDDTNAYNNDN-KDFMGYETN 266
           +S+ S+   Y   N  + N YNN+N K    Y  N
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNIN 116


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 243  PPANMDDTNAYNNDNKD 259
            PP N D  N+  ND+K+
Sbjct: 1863 PPRNHDQNNSSFNDSKE 1879


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,937
Number of Sequences: 429
Number of extensions: 7045
Number of successful extensions: 34
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 10
length of query: 479
length of database: 140,377
effective HSP length: 60
effective length of query: 419
effective length of database: 114,637
effective search space: 48032903
effective search space used: 48032903
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)