Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000024-TA|BGIBMGA000024-PA|IPR003254|Insect immunity
protein and cecropin, IPR000875|Cecropin
         (63 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903...    28   0.82 
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069...    27   1.9  
03_06_0498 - 34341441-34341575,34341808-34341945,34342019-343421...    27   1.9  
11_06_0331 - 22417469-22418071                                         25   7.6  
01_01_0220 + 1866989-1868393,1868465-1869153                           25   7.6  

>02_04_0157 +
           20388761-20388763,20389807-20389935,20390206-20390349,
           20390690-20390835,20390915-20391071,20391312-20391370,
           20391466-20391664,20392232-20392381,20392471-20392607,
           20392717-20392863,20392975-20393076,20395655-20395712,
           20395816-20395917,20396236-20396273,20396409-20396535,
           20397092-20397259,20397356-20397487,20400222-20400331,
           20400400-20400460,20400929-20401106,20401194-20401399,
           20401552-20401671,20402523-20402621,20404177-20404386,
           20404704-20404843,20404945-20405053,20405351-20405431,
           20405523-20405693,20405825-20405974,20407029-20407202,
           20407453-20407479,20407688-20407758,20407843-20407942,
           20408305-20408361,20409457-20409513,20409656-20409736,
           20410336-20410421,20410535-20410649
          Length = 1466

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 8/29 (27%), Positives = 20/29 (68%)

Query: 33  KIEKMGRNIRDGIVKAGPAIEVLGSAKAI 61
           K++  GR+++  ++++ P +E  G+AK +
Sbjct: 179 KVQSGGRSVQQQVLESNPVLEAFGNAKTV 207


>03_06_0766 -
           36106116-36106230,36106598-36106716,36106880-36106960,
           36107062-36107118,36107350-36107373,36107810-36107909,
           36107983-36108053,36108132-36108236,36108674-36108847,
           36109406-36109555,36109701-36109871,36109968-36110024,
           36110107-36110142,36110165-36110357,36110439-36110578,
           36110960-36111166,36111442-36111498,36111711-36111809,
           36112289-36112408,36112865-36113032,36113450-36113510,
           36113611-36113720,36114132-36114263,36114344-36114511,
           36115118-36115182,36115242-36115372,36115450-36115487,
           36116272-36116373,36116480-36116537,36117479-36117580,
           36117695-36117909,36118158-36118307,36118699-36118858,
           36118984-36119042,36119287-36119443,36119536-36119681,
           36121376-36121648,36122889-36122891
          Length = 1457

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 33  KIEKMGRNIRDGIVKAGPAIEVLGSAKAI 61
           K +  GR+++  I+++ P +E  G+AK +
Sbjct: 179 KAQAEGRSVQQQILESNPVLEAFGNAKTV 207


>03_06_0498 -
           34341441-34341575,34341808-34341945,34342019-34342117,
           34342320-34342400,34342548-34342610,34342717-34342764,
           34343033-34343410,34345413-34345537,34345635-34345701,
           34345797-34345856,34346495-34346621,34346670-34346986
          Length = 545

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 12  ALVLALSMTSAAPEPRWKIFKKIEKMGRNIRDGIVKAGPAIEVL 55
           A+++A+ M +  P PRW + + ++    ++ D   KA  A+  L
Sbjct: 259 AVIMAIGMWNLPPSPRWLLLRAVQGKA-SVEDNKKKAIQALRSL 301


>11_06_0331 - 22417469-22418071
          Length = 200

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 25  EPRWKIFKKIEKMGRNIRDGIVKAG 49
           E R K+   +EK+ +++RDGI K G
Sbjct: 129 ERRSKLDDDLEKLQKDVRDGIDKDG 153


>01_01_0220 + 1866989-1868393,1868465-1869153
          Length = 697

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 10  VFALVLALSMTSAAPEPRWKIFKKIEKMGRNIRDGIVKAGPAIEVLGSAKAI 61
           V  L LALS  SAAP+ R KI   + KM   IR    +A P+ E +  +  +
Sbjct: 632 VAMLQLALSCASAAPDQRPKI-GYVVKMIEEIR-ACGEASPSHESMDESSGV 681


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.137    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,566,829
Number of Sequences: 37544
Number of extensions: 43229
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 5
length of query: 63
length of database: 14,793,348
effective HSP length: 43
effective length of query: 20
effective length of database: 13,178,956
effective search space: 263579120
effective search space used: 263579120
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)