Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000024-TA|BGIBMGA000024-PA|IPR003254|Insect immunity
protein and cecropin, IPR000875|Cecropin
         (63 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   4.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   4.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    18   8.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    18   8.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    18   8.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 14  VLALSMTSAAPEPRWKIFKKIEKMGRNIRDGIVKAGPAIEVLGSAKAI 61
           ++ ++     PE RW      E M       +V +GP   +LGS  A+
Sbjct: 257 LVCVAQACPTPEYRWYAQTGSEPM-------LVLSGPRTRLLGSVLAL 297


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 14  VLALSMTSAAPEPRWKIFKKIEKMGRNIRDGIVKAGPAIEVLGSAKAI 61
           ++ ++     PE RW      E M       +V +GP   +LGS  A+
Sbjct: 257 LVCVAQACPTPEYRWYAQTGSEPM-------LVLSGPRTRLLGSVLAL 297


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 40  NIRDGIVKAGPAIEVLGSAKAIGK 63
           N R GI++   A +V+   K I K
Sbjct: 139 NFRTGIMQQDNAEQVILDPKLIAK 162


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 40  NIRDGIVKAGPAIEVLGSAKAIGK 63
           N R GI++   A +V+   K I K
Sbjct: 139 NFRTGIMQQDNAEQVILDPKLIAK 162


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 40  NIRDGIVKAGPAIEVLGSAKAIGK 63
           N R GI++   A +V+   K I K
Sbjct: 139 NFRTGIMQQDNAEQVILDPKLIAK 162


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.137    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,281
Number of Sequences: 429
Number of extensions: 328
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 63
length of database: 140,377
effective HSP length: 43
effective length of query: 20
effective length of database: 121,930
effective search space:  2438600
effective search space used:  2438600
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.2 bits)
S2: 35 (18.2 bits)