Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000023-TA|BGIBMGA000023-PA|IPR003254|Insect immunity
protein and cecropin, IPR000875|Cecropin
         (63 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    24   2.2  
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2...    24   2.2  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    23   3.8  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    23   5.0  
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    23   5.0  
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    23   5.0  
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    23   6.6  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    22   8.8  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    22   8.8  

>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 20  TSAAPEPRWKIFKKIEKMGRNIRDGIVKAG 49
           T+ A +PR K+FK+ EK  +  R    +AG
Sbjct: 277 TALASDPRIKLFKEQEKAAKAARKWEREAG 306


>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
           Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 14  VLALSMTSAAPEPRWKIFKKIEKMGRNIRDGIVKAGPAIEVLGSAKAI 61
           VL    T ++P  ++KIF K+ ++ + + DG  +    +++L S   +
Sbjct: 293 VLLKEETLSSPV-KYKIFMKLSEVDKRLNDGADETLQLLDLLSSISVV 339


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 2/32 (6%)

Query: 5   KILSFVFALVLALSMTSAAPEPRWKIFKKIEK 36
           +I+ F+FALV+++++   A    W+  KK+E+
Sbjct: 574 RIVIFIFALVVSMAIYCTAAYFVWQ--KKVER 603


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 14  VLALSMTSAAPEPRWKIFKKIEK 36
           VLAL M++   E +  +FKK EK
Sbjct: 339 VLALLMSNQLVEIKGAVFKKFEK 361


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 11  FALVLALSMTSAAPEPRWKIFKKIEKMGRNIRDGIVKAGPAIEV 54
           FAL +   + ++ P+P+        ++ R I D + + G   EV
Sbjct: 170 FALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 213


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 32  KKIEKMGRNIRDGIVKAGPAIEVLG 56
           +KIEK+   I+D +  AG   EVLG
Sbjct: 126 EKIEKLQDEIQDYMDAAGELNEVLG 150


>SPAC343.14c |||translation initiation factor
          eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 9  FVFALVLALSMTSAAPEPRWKIFKKIEKMGRNIRDGIVKAGP 50
          F  A+  AL M     + RW    ++    R +   +VKA P
Sbjct: 29 FAVAVETALVMRQVISQTRWSTVDQLIDTVRAVGSTLVKAQP 70


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 23  APEPRWKIFKKIEKMGRNIRDGIVKAGPAIE 53
           +P PR +I ++ E   + +   ++ A PA+E
Sbjct: 224 SPNPRNEISQQAELFSKIMAQNVLMAKPALE 254


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 33  KIEKMGRNIRDGIVKAGPAIEVLGSAK 59
           KIEK   NI  G+++A  A E+L  A+
Sbjct: 196 KIEKKYGNITLGLIRALLAREILSPAE 222


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.137    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,712
Number of Sequences: 5004
Number of extensions: 5752
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 9
length of query: 63
length of database: 2,362,478
effective HSP length: 43
effective length of query: 20
effective length of database: 2,147,306
effective search space: 42946120
effective search space used: 42946120
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)