Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000022-TA|BGIBMGA000022-PA|IPR007087|Zinc finger,
C2H2-type
         (199 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16690.1 68418.m01954 origin recognition complex subunit 3-re...    34   0.074
At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) famil...    29   1.6  
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa...    29   2.1  
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa...    29   2.1  
At2g23510.1 68415.m02806 transferase family protein low similari...    28   3.7  
At5g12000.1 68418.m01403 protein kinase family protein contains ...    27   8.5  

>At5g16690.1 68418.m01954 origin recognition complex subunit
           3-related / ORC3-related low similarity to SP|Q9UBD5
           Origin recognition complex subunit 3 (Origin recognition
           complex subunit Latheo) {Homo sapiens}
          Length = 556

 Score = 33.9 bits (74), Expect = 0.074
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 3   CIDGHEVVAEYIDPNNDTSSVPDLPAEEWYTEHVRESQYLLQVVKCDDQKCCSPRRSDLH 62
           C+ G  ++ +++ P  D + V  L +  WY E+      ++ +V  D ++CC P  SDL 
Sbjct: 195 CLRG--LLRQFVMPTVDVADVTILAS--WYRENKNHENPVVIIVD-DTERCCGPVLSDLI 249

Query: 63  MILHDRFLPPP 73
           +IL +  +  P
Sbjct: 250 LILSEWAIKVP 260


>At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) family
           protein contains Pfam domain, PF00096: Zinc finger, C2H2
           type; contains Pfam domain, PF01428: AN1-like Zinc
           finger
          Length = 279

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/44 (34%), Positives = 19/44 (43%)

Query: 120 LYYPSVRDDLGKRCCSTCGIYFASSTRAAEHRRSAHIAPAKQAH 163
           L + S +D+     C  CG  F+S T   EH    H    KQ H
Sbjct: 201 LQFSSSKDNGIVEVCPQCGAKFSSVTSLVEHVEKTHERNKKQNH 244


>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
           domain PF00929: exonuclease
          Length = 344

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/71 (21%), Positives = 29/71 (40%)

Query: 101 IHHCLPIQPLNAFISTLYDLYYPSVRDDLGKRCCSTCGIYFASSTRAAEHRRSAHIAPAK 160
           + HC   + +   ++    L   + +    KR C+ C   F  +   AEH+   H++P +
Sbjct: 52  LKHCKSFESVREHLNVPDHLSKGNCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPR 111

Query: 161 QAHMFRKVRPS 171
                 +  PS
Sbjct: 112 PLGTSTQRNPS 122


>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
           domain PF00929: exonuclease
          Length = 344

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/71 (21%), Positives = 29/71 (40%)

Query: 101 IHHCLPIQPLNAFISTLYDLYYPSVRDDLGKRCCSTCGIYFASSTRAAEHRRSAHIAPAK 160
           + HC   + +   ++    L   + +    KR C+ C   F  +   AEH+   H++P +
Sbjct: 52  LKHCKSFESVREHLNVPDHLSKGNCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPR 111

Query: 161 QAHMFRKVRPS 171
                 +  PS
Sbjct: 112 PLGTSTQRNPS 122


>At2g23510.1 68415.m02806 transferase family protein low similarity
           to EIG-I24 from Nicotiana tabacum [gi:10798748],
           10-deacetylbaccatin III-10-O-acetyl transferase from
           Taxus cuspidata [gi:6746554]; contains Pfam transferase
           family domain PF02458
          Length = 451

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 16  PNNDTSSVPDLPAEEWYTEHV 36
           P +DT++ P LP ++W TE +
Sbjct: 218 PGDDTAASPYLPTDDWVTEKI 238


>At5g12000.1 68418.m01403 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 703

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 75  PITQVDGHLTIPDFQEHDGKSFAPFLIHHCLP 106
           P +Q +G  T+P+   H+ K F P    H +P
Sbjct: 191 PRSQRNGRNTVPERYSHENKGFKPVREMHKIP 222


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.138    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,271,679
Number of Sequences: 28952
Number of extensions: 222296
Number of successful extensions: 456
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 6
length of query: 199
length of database: 12,070,560
effective HSP length: 78
effective length of query: 121
effective length of database: 9,812,304
effective search space: 1187288784
effective search space used: 1187288784
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)