GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000022-TA|BGIBMGA000022-PA|IPR007087|Zinc finger,
C2H2-type
         (199 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    27   1.9  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    26   3.3  

>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 442

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 43 LQVVKCDDQKCCSPRRSDLHMILH 66
          L+   C D +CC     DLH ++H
Sbjct: 76 LEEAFCRDFRCCGQTLEDLHQLIH 99


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 15  DPNNDTSSVPDLPAEEWYTEHVRESQYLLQVVKCDDQ 51
           DP+ DTS +PD  AE    E+ + ++Y  Q +K  +Q
Sbjct: 99  DPSADTSFLPD--AEREIRENAKRAEYRKQWLKEQEQ 133


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.138    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,019,846
Number of Sequences: 5004
Number of extensions: 43270
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 2
length of query: 199
length of database: 2,362,478
effective HSP length: 69
effective length of query: 130
effective length of database: 2,017,202
effective search space: 262236260
effective search space used: 262236260
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)