GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000022-TA|BGIBMGA000022-PA|IPR007087|Zinc finger,
C2H2-type
         (199 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422...    28   4.5  
01_01_1125 - 8920590-8924372                                           28   5.9  
11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558     27   7.8  
11_06_0155 - 20712601-20713553,20713618-20714000,20714240-207142...    27   7.8  
01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008     27   7.8  

>11_01_0533 +
           4214900-4215162,4215986-4219043,4219613-4221539,
           4221561-4222094,4222388-4222842,4223073-4223189,
           4223319-4223477
          Length = 2170

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 72  PPYPITQVDGHL--TIPDFQEHDGKSFAPFLIHHCLPIQPLNAFISTL-YDLYYPSVRDD 128
           PP P+  + G L  T+  F   DGKSF P  I + L I  L ++ S L  D    ++   
Sbjct: 422 PPVPLADILGALAYTLMVFSGTDGKSFDPIEIENIL-IVLLKSYDSNLVLDRILEALASL 480

Query: 129 LGKRCCS 135
            G  C S
Sbjct: 481 YGNACLS 487


>01_01_1125 - 8920590-8924372
          Length = 1260

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%)

Query: 133 CCST-CGIYFASSTRAAEHRRSAHIAPAKQAHMFRKVRPSRIV 174
           CC   CG   + +T++A  RRSA   P++ + M R  RPSR +
Sbjct: 16  CCGALCG-GASPATKSASSRRSA---PSRMSAMSRPARPSRSI 54


>11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558
          Length = 852

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 4/46 (8%)

Query: 2   VCIDGHEVVAEYIDPNNDTSSVPDLPAEEWYTEHVRESQYLLQVVK 47
           +C+D   ++AE +  ++  +S+ D  A  W T  VR+ Q  LQ++K
Sbjct: 213 ICVDTSAIIAERVYQHSSVTSLFDCKA--WIT--VRDCQSHLQILK 254


>11_06_0155 -
           20712601-20713553,20713618-20714000,20714240-20714271,
           20714315-20714571,20714699-20714724,20714894-20715081,
           20715302-20715595,20715714-20715752,20715827-20715944,
           20716076-20716157,20716610-20716668,20717156-20717221,
           20717358-20717447,20718142-20718236
          Length = 893

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 103 HCLPIQP-LNAFISTLYDLYYPSVRDDLGKRCCSTCGIYFASSTRAAEHRRSAHIAPAKQ 161
           H L + P  +A I TLY   +    ++L      TC     +ST  A HRR   +   + 
Sbjct: 145 HSLKVDPNFDALILTLYPDLHKDEEEELAFTEEKTCRKKIQASTDEAPHRRKEALGKKRS 204

Query: 162 A 162
           A
Sbjct: 205 A 205


>01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008
          Length = 460

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 131 KRCCSTCGIYFASSTRAAEHRRSAHIAPAKQAHMFRKV 168
           ++C  +  +  A+ T  A  RR  H  P ++A +FR +
Sbjct: 100 RQCRVSAAVLTAAETATATRRRVTHSMPPEKAEVFRSL 137


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.138    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,717,334
Number of Sequences: 37544
Number of extensions: 290509
Number of successful extensions: 579
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 578
Number of HSP's gapped (non-prelim): 5
length of query: 199
length of database: 14,793,348
effective HSP length: 78
effective length of query: 121
effective length of database: 11,864,916
effective search space: 1435654836
effective search space used: 1435654836
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)