GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000022-TA|BGIBMGA000022-PA|IPR007087|Zinc finger,
C2H2-type
         (199 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7693| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)                  31   0.49 
SB_21527| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   4.5  
SB_49183| Best HMM Match : CRA_rpt (HMM E-Value=3.7)                   28   6.0  
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   7.9  

>SB_7693| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)
          Length = 688

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 89  QEHDGKSFAPFLIHHCLPIQPL-NAFISTL-YDLYYPSVRDDLGKRCCSTCGIYFASSTR 146
           ++H  K+ +  +I HC     L N+F++ + Y L  P  R  L +  C T    F SS R
Sbjct: 229 EQHCNKNKSIIIILHCAHFLILSNSFLNVVVYSLRMPEFRKALRELLCRTTSDEFRSSER 288

Query: 147 -AAEHRRSAHI 156
              EHR  A +
Sbjct: 289 NDQEHRGEAAV 299


>SB_21527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 527

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 126 RDDLGKRCCSTCGIYFASSTRAAEHRRSAHIAPAKQAH 163
           +DD  K C ST  +   S+  AA  + SA   PAKQ H
Sbjct: 411 QDDCTKSCSSTDEVQKISTPPAARMKPSARKLPAKQKH 448


>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1741

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)

Query: 133 CCSTCGIYFASSTRAAEHRRSAH 155
           CCS CG  F  S   + H R  H
Sbjct: 884 CCSICGASFGKSKALSRHHRRIH 906


>SB_49183| Best HMM Match : CRA_rpt (HMM E-Value=3.7)
          Length = 180

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/56 (33%), Positives = 25/56 (44%)

Query: 126 RDDLGKRCCSTCGIYFASSTRAAEHRRSAHIAPAKQAHMFRKVRPSRIVTRRANVL 181
           +DD  K C ST  +   S+  AA  + SA   PAKQ      V       RR ++L
Sbjct: 118 QDDCTKSCSSTDEVQEISTPPAARMKPSARKLPAKQKREDAFVMTELCPARRKSLL 173


>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 74  YPITQVDGHLTIPDFQEHDGKSF---APFLIHHCLPIQPLNAFISTLYDLY 121
           YP   V+G L + +   HDG+ +   A  L HHCL + PL     T  D Y
Sbjct: 20  YPHKAVNGVL-LGEEVTHDGELYVLDAVPLFHHCLGLAPLLEVALTQVDSY 69


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 134 CSTCGIYFASSTRAAEHRRSAHI--APAKQAHMFRK 167
           C  CG YF   T    H  S HI   PA QA +F +
Sbjct: 764 CQYCGYYFKCETSIIRHMESNHIGVTPA-QASVFEQ 798


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.138    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,739,046
Number of Sequences: 59808
Number of extensions: 334666
Number of successful extensions: 777
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 16
length of query: 199
length of database: 16,821,457
effective HSP length: 79
effective length of query: 120
effective length of database: 12,096,625
effective search space: 1451595000
effective search space used: 1451595000
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)