GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000022-TA|BGIBMGA000022-PA|IPR007087|Zinc finger,
C2H2-type
         (199 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC038596-1|AAH38596.1| 1937|Homo sapiens CHD4 protein protein.         31   2.7  
Z97832-3|CAI20189.1|  544|Homo sapiens zinc finger protein 76 (e...    29   8.2  
M91592-1|AAA98739.1|  515|Homo sapiens zinc-finger protein protein.    29   8.2  
BT007316-1|AAP35980.1|  570|Homo sapiens zinc finger protein 76 ...    29   8.2  
BC013013-1|AAH13013.1|  670|Homo sapiens zinc finger protein 526...    29   8.2  
BC002549-1|AAH02549.1|  570|Homo sapiens zinc finger protein 76 ...    29   8.2  
BC000133-1|AAH00133.1|  570|Homo sapiens zinc finger protein 76 ...    29   8.2  
AB075831-1|BAB85537.1|  679|Homo sapiens KIAA1951 protein protein.     29   8.2  

>BC038596-1|AAH38596.1| 1937|Homo sapiens CHD4 protein protein.
          Length = 1937

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 23   VPDLPAEEWYTEHVRESQYLLQVVKCD---DQKCCSPRRSDLHMILHDRFLPPPYPITQV 79
            +P LP +    +   +S Y +   + D   D++  +PRR     + +D+  P P  + +V
Sbjct: 1373 LPSLPPDWQDDQSDNQSDYSVASEEGDEDFDERSEAPRRPSRKGLRNDKDKPLPPLLARV 1432

Query: 80   DGHLTIPDFQEHDGKSFAPFLIHHCLPIQPLNAF 113
             G++ +  F     K+F   ++ + +P  P +AF
Sbjct: 1433 GGNIEVLGFNARQRKAFLNAIMRYGMP--PQDAF 1464


>Z97832-3|CAI20189.1|  544|Homo sapiens zinc finger protein 76
           (expressed in testis) protein.
          Length = 544

 Score = 29.5 bits (63), Expect = 8.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 134 CSTCGIYFASSTRAAEHRRSAH 155
           CSTCG  +  ++  A H+RSAH
Sbjct: 321 CSTCGKTYRQTSTLAMHKRSAH 342


>M91592-1|AAA98739.1|  515|Homo sapiens zinc-finger protein protein.
          Length = 515

 Score = 29.5 bits (63), Expect = 8.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 134 CSTCGIYFASSTRAAEHRRSAH 155
           CSTCG  +  ++  A H+RSAH
Sbjct: 347 CSTCGKTYRQTSTLAMHKRSAH 368


>BT007316-1|AAP35980.1|  570|Homo sapiens zinc finger protein 76
           (expressed in testis) protein.
          Length = 570

 Score = 29.5 bits (63), Expect = 8.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 134 CSTCGIYFASSTRAAEHRRSAH 155
           CSTCG  +  ++  A H+RSAH
Sbjct: 347 CSTCGKTYRQTSTLAMHKRSAH 368


>BC013013-1|AAH13013.1|  670|Homo sapiens zinc finger protein 526
           protein.
          Length = 670

 Score = 29.5 bits (63), Expect = 8.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 134 CSTCGIYFASSTRAAEHRRSAHIAPAKQ 161
           C  C   FAS++R + HRR+ H  P ++
Sbjct: 444 CPQCSKSFASASRLSRHRRAVHGPPERR 471


>BC002549-1|AAH02549.1|  570|Homo sapiens zinc finger protein 76
           (expressed in testis) protein.
          Length = 570

 Score = 29.5 bits (63), Expect = 8.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 134 CSTCGIYFASSTRAAEHRRSAH 155
           CSTCG  +  ++  A H+RSAH
Sbjct: 347 CSTCGKTYRQTSTLAMHKRSAH 368


>BC000133-1|AAH00133.1|  570|Homo sapiens zinc finger protein 76
           (expressed in testis) protein.
          Length = 570

 Score = 29.5 bits (63), Expect = 8.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 134 CSTCGIYFASSTRAAEHRRSAH 155
           CSTCG  +  ++  A H+RSAH
Sbjct: 347 CSTCGKTYRQTSTLAMHKRSAH 368


>AB075831-1|BAB85537.1|  679|Homo sapiens KIAA1951 protein protein.
          Length = 679

 Score = 29.5 bits (63), Expect = 8.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 134 CSTCGIYFASSTRAAEHRRSAHIAPAKQ 161
           C  C   FAS++R + HRR+ H  P ++
Sbjct: 453 CPQCSKSFASASRLSRHRRAVHGPPERR 480


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.323    0.138    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,369,868
Number of Sequences: 224733
Number of extensions: 1454143
Number of successful extensions: 6919
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6908
Number of HSP's gapped (non-prelim): 12
length of query: 199
length of database: 73,234,838
effective HSP length: 86
effective length of query: 113
effective length of database: 53,907,800
effective search space: 6091581400
effective search space used: 6091581400
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 63 (29.5 bits)